Dear RRRRRrrrrrrrrlist!
I´ve got two lists which contain sets of DNA-sequences. They look
something like this:
List of 33
$ Cunonia_atrorubens : chr [1:247] "t" "t" "n" "t" ...
$ Cunonia_balansae : chr [1:254] "t" "c" "c" "c" ...
$ Cunonia_capensis : chr [1:236] "v" "t" "c" "c" ...
$ Cunonia_macrophylla : chr [1:236] "t" "t" "a" "t" ...
$ Pancheria_engleriana : chr [1:315] "c" "t" "c" "c" ...
[....]
$ Brunellia_colombiana : chr [1:336] "t" "t" "c" "t" ...
$ Brunellia_oliveri : chr [1:368] "t" "a" "a" "t" ...
$ Bauera_rubioides : chr [1:276] "t" "c" "t" "c" ...
$ Bauera_sessiliflora : chr [1:332] "t" "c" "t" "c" ...
$ Davidsonia_pruriens_var._jeryseyana: chr [1:300] "t" "t" "c" "t" ...
$ Davidsonia_sp._'johnsonii' : chr [1:268] "c" "c" "c" "t" ...
- attr(*, "species")= chr [1:33] "Cunonia_atrorubens"
"Cunonia_balansae" "Cunonia_capensis" "Cunonia_macrophylla" ...
The names of each entry in first list match exactly the names of the
entries in the second list and both list contain the same number of
sequences (although not of the same length)
I want to concatenate these sequences by the following function:
interleave <- function(seq1, seq2)
{
#create a list to contain concatenated sequences
sequence <- list()
for (name in names(seq1)) # get names as indices
{
# concatenate sequences
sequence[[name]] <- c(seq1[[name]], seq2[[name]])
}
# return concatenated sequences
invisible(sequence)
}
I guess the function works in principle, because they commands do so
if I enter them step by step.
But when I call the function it does not return my object "sequence".
But why?
(This happened to me with some functions that I wrote, but not all.
The error seems quite erratic : ) to me and I can´t figure out what
to change)
Thanks a lot in advance!
Christoph
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