This has come up several times, all with long obselete versions of gcc.
R does not use __builtin_isnan, but gcc does in its own (rather than
Solaris') header files. So it is an issue with the compiler, and note
that 3.4.2 is an old (Sept 2004) version of the compiler.
If you are happy to use SunFreeware, they offer a pre-built R (apart for
some unstated reason for the foreign package) at
http://www.sunfreeware.com/programlistintel10.html#R
and so it would appear that others have succeeded with more recent
compilers.
On Wed, 31 Jan 2007, Wolfgang Raffelsberger wrote:
Dear List,
we're trying to install R on Solaris10 on a x86 (amd64).
During the installation we pass successfully the ./configure but we get
an error through the built-in function "_isnan" which we see existing in
/lib
When passing the command "make" we get :
gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2
-I../../src/extra/pcre -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -g -O2 -c
serialize.c -o serialize.o
In file included from ../../src/include/Rinternals.h:921,
from ../../src/include/Defn.h:72,
from serialize.c:29:
../../src/include/Rinlinedfuns.h: In function `fmin2_int':
../../src/include/Rinlinedfuns.h:602: warning: implicit declaration of
function `__builtin_isnan'
[... and ...]
gcc -std=gnu99 -L/usr/local/lib -o R.bin Rmain.o CConverters.o
CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o
apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o
colors.o complex.o connections.o context.o cov.o cum.o dcf.o
datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o
duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o
gevents.o gram.o gram-ex.o graphics.o identical.o internet.o
iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o
match.o memory.o model.o names.o objects.o optim.o optimize.o
options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o
print.o printarray.o printvector.o printutils.o qsort.o random.o
regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o
serialize.o size.o sort.o source.o split.o sprintf.o startup.o
subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o
version.o vfonts.o xxxpr.o mkdtemp.o ../unix/libun!
ix.a ../appl/libappl.a ../nmath/libnmath.a -L../../lib -lRblas
-L/opt/sfw/lib/gcc/i386-pc-solaris2.10/3.4.2 -L/usr/ccs/bin
-L/opt/sfw/lib -lg2c -lm -lgcc_s ../extra/zlib/libz.a
../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a
../extra/intl/libintl.a -lreadline -lncurses -lnsl -lsocket -ldl -lm
Undefined first referenced
symbol in file
__builtin_isnan arithmetic.o
ld: fatal: Symbol referencing errors. No output written to R.bin
collect2: ld returned 1 exit status
Thank's in advance for all hints how we could overcome this problem,
Wolfgang
. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
. . . . .
Wolfgang Raffelsberger, PhD
Laboratoire de BioInformatique et Génomique Intégrative
IGBMC
1 rue Laurent Fries, 67404 Illkirch Strasbourg, France
Tel (+33) 388 65 3300 Fax (+33) 388 65 3276
http://www-bio3d-igbmc.u-strasbg.fr/~wraff
[EMAIL PROTECTED]
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--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
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