Dear colleagues,
I've just come across a problem with the following command which is a
part of the "metaOverview.R" code file provided as an monography-
accompanying file at
http://www.bioconductor.org/docs/mogr/metadata:
##################################
R> hasChr <- eapply(GOTERM, function(x)
+ x[grep("chromosome", Term(x))])
Error in x[grep("chromosome", Term(x))] : object is not subsettable
##################################
I have run the command in the (PPC) Mac OS X R 2.4.1 and (AMD Ubuntu)
Linux R 2.4.0 with the same result so it shouldn't be any
distribution-dependent problem. Obviously the "metaOverview.R" is not
up-to-date since I had few problems before as well (e.g. that a
function is in another package in BioC 1.9 etc.) but I was able to
"repair" everything myself. However, this one I don't understand.
Anyone can help? Some classes have changed?!
Best regards, Radek Blatny
Radek Blatny, MSc.
Institute of Molecular Genetics
Department of Mouse Molecular Genetics (Jiri Forejt unit)
Czech Academy of Sciences
Videnska 1083
142 20, Prague
Czech Republic
Tel. (+420) 241 062 260
Fax (+420) 241 062 154
http://www.img.cas.cz/mmg
email: [EMAIL PROTECTED]
Skype name: blatny
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