AJ, Can you test and let us know if this is OK
Ricky ______________________ Principal Analyst Information Services Queen's University Belfast tel: 02890 974824 fax: 02890 976586 email: [EMAIL PROTECTED] -----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] Sent: 21 May 2007 12:41 To: Peter Dalgaard Cc: [EMAIL PROTECTED]; Dr. A. J. McKnight; r-help@stat.math.ethz.ch; Ricky Rankin Subject: Re: [R] FW: R Hi All I think I've now got this working on XC cluster. Latest version 2.5.0. Just type R. man R for man pages. Cheers Derek On Dec 11 2006, Peter Dalgaard wrote: > [EMAIL PROTECTED] wrote: > > Hi Ricky / AJ > > > > Progress of sorts. I got passed the last problem by looking at the > > makefiles but run in to the next one, see below. > > > > It has created files in /contrib/R-2.4.0. there is an " R " under > > /contrib/R-2.4.0/bin/R. > > > > Running it gives :- > > > > > > /contrib/R-2.4.0/bin/R > > > > R version 2.4.0 (2006-10-03) > > Copyright (C) 2006 The R Foundation for Statistical Computing > > ISBN 3-900051-07-0 > > > > R is free software and comes with ABSOLUTELY NO WARRANTY. > > You are welcome to redistribute it under certain conditions. > > Type 'license()' or 'licence()' for distribution details. > > > > R is a collaborative project with many contributors. > > Type 'contributors()' for more information and > > 'citation()' on how to cite R or R packages in publications. > > > > Type 'demo()' for some demos, 'help()' for on-line help, or > > 'help.start()' for an HTML browser interface to help. > > Type 'q()' to quit R. > > > > > > *** caught segfault *** > > address 40b843f0, cause 'memory not mapped' > > > > Traceback: > > 1: .Call("La_dgesv", a, b, tol, PACKAGE = "base") > > 2: solve.default(rgb) > > 3: solve(rgb) > > 4: drop(whitexyz %*% solve(rgb)) > > 5: make.rgb(red = c(0.625, 0.34), green = c(0.28, 0.595), blue = > > c(0.155, 0.07), gamma = 1.8, white = "D65", name = "Apple RGB") > > 6: eval(expr, envir, enclos) > > 7: eval(i, envir) > > 8: sys.source(codeFile, env, keep.source = keep.source) > > 9: try(sys.source(codeFile, env, keep.source = keep.source)) 10: > > loadNamespace(package, c(which.lib.loc, lib.loc), keep.source = > > keep.source) 11: try({ ns <- loadNamespace(package, c(which.lib.loc, > > lib.loc), keep.source = keep.source) dataPath <- > > file.path(which.lib.loc, package, "data") env <- attachNamespace(ns, > > pos = pos, dataPath = dataPath)}) 12: library(package, lib.loc = > > lib.loc, character.only = TRUE, logical = TRUE, warn.conflicts = > > warn.conflicts, keep.source = keep.source, version = version) 13: > > require(pkg, quietly = TRUE, warn.conflicts = FALSE, character.only = > > TRUE, save = FALSE) 14: .First.sys() > > > > Possible actions: > > 1: abort (with core dump) > > 2: normal R exit > > 3: exit R without saving workspace > > 4: exit R saving workspace > > Selection: 14 > > aborting ... > > Segmentation fault (core dumped) > > > > The make command fails with :- > > > > make[4]: Leaving directory `/contrib/R-2.4.0/src/library/grDevices/src' > > > > *** caught segfault *** > > address 4084b2f0, cause 'memory not mapped' > > > > Traceback: > > 1: .Call("La_dgesv", a, b, tol, PACKAGE = "base") > > 2: solve.default(rgb) > > 3: solve(rgb) > > 4: drop(whitexyz %*% solve(rgb)) > > 5: make.rgb(red = c(0.625, 0.34), green = c(0.28, 0.595), blue = > > c(0.155, 0.07), gamma = 1.8, white = "D65", name = "Apple RGB") > > 6: eval(expr, envir, enclos) > > 7: eval(i, envir) > > 8: sys.source(codeFile, env, keep.source = keep.source) > > 9: try(sys.source(codeFile, env, keep.source = keep.source)) 10: > > loadNamespace(package, lib.loc, keep.source, TRUE, TRUE) 11: > > code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, > > compress = compress) 12: tools:::makeLazyLoading("grDevices") aborting > > ... /bin/sh: 18508 Memory fault(coredump) make[3]: *** [all] Error 139 > > make[3]: Leaving directory `/contrib/R-2.4.0/src/library/grDevices' > > make[2]: *** [R] Error 1 make[2]: Leaving directory > > `/contrib/R-2.4.0/src/library' make[1]: *** [R] Error 1 make[1]: > > Leaving directory `/contrib/R-2.4.0/src' make: *** [R] Error 1 > > > > Do not hold out much hope from mailing list, as they did not answer my > > last email, but have included it anyway. > > > > > "They" might not have had enough information to go on (and r-devel had > been a better target). Things like OS and computer versions. (I can't > seem to find the earlier report though). > > Looks like you have broken lapack libraries, so you may want to upgrade > them or override the selection made during the configure phase. > > Make sure to read > http://cran.r-project.org/doc/manuals/R-admin.html > and in particular Appendix A3 which discusses some of these issues. > > > Cheers > > > > Derek > > > > > > ================================ > > > > Derek McPhee > > Information Services > > Queen's University Belfast > > e-mail [EMAIL PROTECTED] > > Tel 028 90973840 > > Fax 028 90975066 > > > > ______________________________________________ > > R-help@stat.math.ethz.ch mailing list > > https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting > > guide http://www.R-project.org/posting-guide.html and provide > > commented, minimal, self-contained, reproducible code. > > > > -- ================================ Derek McPhee Information Services Queen's University Belfast e-mail [EMAIL PROTECTED] Tel 028 90973840 Fax 028 90975066 ______________________________________________ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.