I'm having trouble getting summaries out of the 250K snp chips in R. I'm using the oligo package and when I attempt to create the necessary SnpQSet object (to get genotype calls and intensities) using snprma, I encounter memory issues.
Anyone have an alternative package or workaround for these large snp chips? -- View this message in context: http://www.nabble.com/Read-in-250K-snp-chips-tf3816761.html#a10805124 Sent from the R help mailing list archive at Nabble.com. ______________________________________________ [email protected] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
