The method can get one new data. But I think that it is not random. I used
the new "random" data to compute the index which I want to get. The
same value was achieved with the data "sites".
I try it again and again. The result is the same.
So I think I need to find one new random sampling method.
On 7/7/07, Daniel Nordlund <[EMAIL PROTECTED]> wrote:
>
> > -----Original Message-----
> > From: [EMAIL PROTECTED] [mailto:
> [EMAIL PROTECTED]
> > On Behalf Of Zhang Jian
> > Sent: Saturday, July 07, 2007 12:31 PM
> > To: r-help
> > Subject: [R] random sampling with some limitive conditions?
> >
> > I want to gain thousands of random sampling data by randomizing the
> > presence-absence data. Meantime, one important limition is that the row
> and
> > column sums must be fixed. For example, the data "tst" is following:
> > site1 site2 site3 site4 site5 site6 site7 site8 1 0 0 0 1 1 0 0 0 1 1
> 1 0
> > 1 0 1 1 0 0 0 1 0 1 0 0 0 0 1 0 1 0 1 1 0 1 0 0 0 0 0 0 1 0 1 1 1 1 1 1
> 0 0
> > 0 0 0 0 0 0 0 0 1 0 1 0 1
> >
> > sum(tst[1,]) = 3, sum(tst[,1])=4, and so on. When I randomize the data,
> the
> > first row sums must equal to 3, and the first column sums must equal to
> 4.
> > The rules need to be applied to each row and column.
> > How to get the new random sampling data? I have no idea.
> > Thanks.
> >
>
> You could reorder your table by stepping through your table a column at a
> time, and for each column randomly deciding to swap the current column with
> a column that has the same column total. Repeat this process for each row,
> i.e. for each row, randomly choose a row with the same row total to swap
> with.
>
> Here is some example code which is neither efficient nor general, but does
> demonstrate the basic idea. You will need to decide if this approach meets
> you needs.
>
> # I created a data file with your table (8x8) and read from it
> sites <- read.table("c:/R/R-examples/site_random_sample.txt", header=TRUE)
> sites
> # get row and column totals
> colsums <- apply(sites,2,sum)
> rowsums <- apply(sites,1,sum)
> # randomly swap columns
> for(i in 1:8) {
> if (runif(1) > .5) {
> swapcol<-sample(which(colsums==colsums[i]),1)
> temp<-sites[,swapcol]
> sites[,swapcol]<-sites[,i]
> sites[,i]<-temp
> }
> }
> # randomly swap rows
> for(i in 1:8) {
> if (runif(1) > .5) {
> swaprow<-sample(which(rowsums==rowsums[i]),1)
> temp<-sites[swaprow,]
> sites[swaprow,]<-sites[i,]
> sites[i,]<-temp
> }
> }
> sites
>
>
> Hope this is helpful,
>
> Dan
>
> Daniel Nordlund
> Bothell, WA USA
>
>
>
>
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