Hello everybody, I am trying to install Rmpi on 64-bit HP-Proliant server. I am facing the following error:
* Installing *source* package 'Rmpi' ... Try to find mpi.h ... Found in /usr/local/mpich-1.2.7p1/include Try to find libmpi or libmpich ... Found libmpich in /usr/local/mpich-1.2.7p1/lib Try to find liblam ... checking for main in -llam... no liblam not found. Probably not LAM-MPI checking for openpty in -lutil... no checking for main in -lpthread... no configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -DPACKAGE_NAME =\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -D PACKAGE_BUGREPORT=\"\" -I/usr/local/mpich-1.2.7p1/include -DMPI2 -I/usr/loc al/include -fpic -g -O2 -std=gnu99 -c conversion.c -o conversion.o gcc -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -DPACKAGE_NAME =\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -D PACKAGE_BUGREPORT=\"\" -I/usr/local/mpich-1.2.7p1/include -DMPI2 -I/usr/loc al/include -fpic -g -O2 -std=gnu99 -c internal.c -o internal.o gcc -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -DPACKAGE_NAME =\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -D PACKAGE_BUGREPORT=\"\" -I/usr/local/mpich-1.2.7p1/include -DMPI2 -I/usr/loc al/include -fpic -g -O2 -std=gnu99 -c RegQuery.c -o RegQuery.o gcc -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -DPACKAGE_NAME =\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -D PACKAGE_BUGREPORT=\"\" -I/usr/local/mpich-1.2.7p1/include -DMPI2 -I/usr/loc al/include -fpic -g -O2 -std=gnu99 -c Rmpi.c -o Rmpi.o Rmpi.c: In function `mpi_universe_size': Rmpi.c:84: warning: implicit declaration of function `MPI_Comm_get_attr' Rmpi.c:84: error: `MPI_UNIVERSE_SIZE' undeclared (first use in this function) Rmpi.c:84: error: (Each undeclared identifier is reported only once Rmpi.c:84: error: for each function it appears in.) Rmpi.c: In function `mpi_comm_spawn': Rmpi.c:873: warning: implicit declaration of function `MPI_Comm_spawn' Rmpi.c:873: error: `MPI_ARGV_NULL' undeclared (first use in this function) Rmpi.c: In function `mpi_comm_get_parent': Rmpi.c:897: warning: implicit declaration of function `MPI_Comm_get_parent' Rmpi.c: In function `mpi_comm_disconnect': Rmpi.c:910: warning: implicit declaration of function `MPI_Comm_disconnect' make: *** [Rmpi.o] Error 1 chmod: cannot access `/usr/local/lib64/R/library/Rmpi/libs/*': No such file or directory ERROR: compilation failed for package 'Rmpi' ** Removing '/usr/local/lib64/R/library/Rmpi' can any of you please suggest as to what needs to be done? Thanks for your time regards Sunitha Manjari Bioinformatics Team C-DAC, Pune-411007 Maharashtra INDIA ______________________________________________ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.