Thanks, you solved it.
For posterity, here's the extra info:
R Session.info():
R version 2.4.1 (2006-12-18)
i686-redhat-linux-gnu
locale:C
attached base packages:
[1] "stats" "graphics" "grDevices" "utils" "datasets" "methods"
[7] "base"
and
#uname -a
Linux stikir.com 2.6.9-023stab043.1-smp #1 SMP Mon Mar 5 16:35:19 MSK 2007
x86_64 x86_64 x86_64 GNU/Linux
So, yes, it was strange that R.i386 was installed. I removed both and
reinstalled R.x86_64 (2.5.1) using yum. Now tseries seems to have installed
sucessfully, although it still threw many warnings.
Thanks again,
Mike
On 7/26/07, Prof Brian Ripley <[EMAIL PROTECTED]> wrote:
>
> On Thu, 26 Jul 2007, Michael Cassin wrote:
>
> > Hi,
> >
> > I'm running R 2.4.1 on Fedora Core 6 and am unable to install the
> tseries
> > package. I've resolved a few problems getting to this point, by running
> a
> > yum update, installing the gcc-gfortran dependency, but now I'm stuck.
> > Could someone please point me in the right direction?
>
> Please read the posting guide and provide the information you were asked
> for: only then we may be able to help you.
>
> You seem to have a system which installed R in /usr/lib/R but has x86_64
> components on it. So what architecture is it that you are trying to run?
>
> My guess is that you installed a i386 RPM on a x86_64 OS. That will
> install and R will run *but* you will not be able to use it to install
> packages. If you installed the i386 RPM after the x86_64 one, it will
> have overwritten some crucial files including /usr/bin/R.
>
> It is possible to have i386 and x86_64 R coexisting on x86_64 Linux, but
> not by installing RPMs for different architectures.
>
>
> >
> > ========R install.packages output =======
> > ==================================
> >
> >> install.packages("tseries")
> >
> > trying URL '
> > http://www.sourcekeg.co.uk/cran/src/contrib/tseries_0.10-11.tar.gz'
> > Content type 'application/x-tar' length 182043 bytes
> > opened URL
> > ==================================================
> > downloaded 177Kb
> >
> > * Installing *source* package 'tseries' ...
> > ** libs
> > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> > -fpic -O3 -g -std=gnu99 -c arma.c -o arma.o
> > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> > -fpic -O3 -g -std=gnu99 -c bdstest.c -o bdstest.o
> > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> > -fpic -O3 -g -std=gnu99 -c boot.c -o boot.o
> > gfortran -fpic -O2 -g -c dsumsl.f -o dsumsl.o
> > In file dsumsl.f:450
> >
> > IF (IV(1) - 2) 30, 40, 50
> > 1
> > Warning: Obsolete: arithmetic IF statement at (1)
> > In file dsumsl.f:3702
> >
> > 10 ASSIGN 30 TO NEXT
> > 1
> > Warning: Obsolete: ASSIGN statement at (1)
> > In file dsumsl.f:3707
> >
> > 20 GO TO NEXT,(30, 50, 70, 110)
> > 1
> > Warning: Obsolete: Assigned GOTO statement at (1)
> > In file dsumsl.f:3709
> >
> > ASSIGN 50 TO NEXT
> > 1
> > Warning: Obsolete: ASSIGN statement at (1)
> > In file dsumsl.f:3718
> >
> > ASSIGN 70 TO NEXT
> > 1
> > Warning: Obsolete: ASSIGN statement at (1)
> > In file dsumsl.f:3724
> >
> > ASSIGN 110 TO NEXT
> > 1
> > Warning: Obsolete: ASSIGN statement at (1)
> > In file dsumsl.f:4552
> >
> > IF (IV(1) - 2) 999, 30, 70
> > 1
> > Warning: Obsolete: arithmetic IF statement at (1)
> > In file dsumsl.f:4714
> >
> > IF (IRC) 140, 100, 210
> > 1
> > Warning: Obsolete: arithmetic IF statement at (1)
> > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> > -fpic -O3 -g -std=gnu99 -c garch.c -o garch.o
> > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> > -fpic -O3 -g -std=gnu99 -c ppsum.c -o ppsum.o
> > gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include
> > -fpic -O3 -g -std=gnu99 -c tsutils.c -o tsutils.o
> > gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o tseries.so arma.o
> > bdstest.o boot.o dsumsl.o garch.o ppsum.o tsutils.o -L/usr/lib/R/lib
> -lRblas
> > -lgfortran -lm -lgcc_s -lgfortran -lm -lgcc_s -L/usr/lib/R/lib -lR
> > /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libRblas.so when
> searching
> > for -lRblas
> > /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libRblas.so when
> searching
> > for -lRblas
> > /usr/bin/ld: cannot find -lRblas
> > collect2: ld returned 1 exit status
> > make: *** [tseries.so] Error 1
> > ERROR: compilation failed for package 'tseries'
> > ** Removing '/usr/lib/R/library/tseries'
> >
> >
> > =============================================
> > =============================================
> >
> >
> > I presume the priority is addressing the error: "/usr/bin/ld: cannot
> find
> > -lRblas"
> >
> > I have the libRblas.so file with R 2.4. Do I need to upgrade to R 2.5 -
> In
> > which case I'll be asking how to fix the problems I'm having doing
> that ;)
> >
> > [~]# yum provides libRblas.so
> > <snip>
> >
> > R.x86_64 2.5.1-2.fc6 extras
> > Matched from:
> > /usr/lib64/R/lib/libRblas.so
> > libRblas.so()(64bit)
> >
> > R.x86_64 2.5.1-2.fc6 extras
> > Matched from:
> > /usr/lib64/R/lib/libRblas.so
> > libRblas.so()(64bit)
> >
> > R.i386 2:2.4.1-1.fc6
> installed
> > Matched from:
> > /usr/lib/R/lib/libRblas.so
> > libRblas.so
> >
> > R.x86_64 2.4.1-4.fc6
> installed
> > Matched from:
> > /usr/lib64/R/lib/libRblas.so
> > libRblas.so()(64bit)
> >
> >
> > Regards,
> > Mike
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > [email protected] mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
>
> --
> Brian D. Ripley, [EMAIL PROTECTED]
> Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
> University of Oxford, Tel: +44 1865 272861 (self)
> 1 South Parks Road, +44 1865 272866 (PA)
> Oxford OX1 3TG, UK Fax: +44 1865 272595
>
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