On a ubuntu linux computer (Feisty, i386), I compile R and additional
packages from source. The compiler is gcc 4.1.2.
The problem is, I can run "sudo R" and successfully compile all
packages (e.g., MASS, lattice) except rggobi. The error seems to be
in display.c. My ggobi is in /usr/local/, which R can find. I don't
think this is a dependence issue because install.packages(...,
dependence=TRUE). The script complains about not finding
"/usr/local/lib/R/library/rggobi/libs/*", but that directory is there,
with one file "rggobi.so" (possibly from an earlier successful
compilation).
Any suggestions on what I am doing wrong? Many thanks in advance.
Yuelin.
--------- R output ---------------
> install.packages("rggobi", repos = "http://lib.stat.cmu.edu/R/CRAN";,
> dependencies = TRUE, clean = TRUE)
trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/rggobi_2.1.6.tar.gz'
Content type 'application/x-gzip' length 424483 bytes
opened URL
==================================================
downloaded 414Kb
* Installing *source* package 'rggobi' ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GGOBI... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -g
-DUSE_EXT_PTR=1 -D_R_=1 -I/usr/local/include/ggobi -I/usr/include/gtk-2.0
-I/usr/include/libxml2 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0
-I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0
-I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12
-I/usr/local/include -fpic -g -O2 -c brush.c -o brush.o
[... snipped ...]
gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -g
-DUSE_EXT_PTR=1 -D_R_=1 -I/usr/local/include/ggobi -I/usr/include/gtk-2.0
-I/usr/include/libxml2 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0
-I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0
-I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12
-I/usr/local/include -fpic -g -O2 -c dataset.c -o dataset.o
gcc -std=gnu99 -I/usr/local/lib/R/include -I/usr/local/lib/R/include -g
-DUSE_EXT_PTR=1 -D_R_=1 -I/usr/local/include/ggobi -I/usr/include/gtk-2.0
-I/usr/include/libxml2 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0
-I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0
-I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12
-I/usr/local/include -fpic -g -O2 -c display.c -o display.o
display.c: In function ‘RS_GGOBI_createDisplay’:
display.c:37: warning: passing argument 3 of ‘klass->createWithVars’ makes
pointer from integer without a cast
display.c:37: warning: passing argument 4 of ‘klass->createWithVars’ from
incompatible pointer type
display.c:37: warning: passing argument 5 of ‘klass->createWithVars’ from
incompatible pointer type
display.c:37: error: too many arguments to function ‘klass->createWithVars’
display.c:39: warning: passing argument 4 of ‘klass->create’ from incompatible
pointer type
display.c:39: error: too many arguments to function ‘klass->create’
make: *** [display.o] Error 1
chmod: cannot access `/usr/local/lib/R/library/rggobi/libs/*': No such file or
directory
ERROR: compilation failed for package 'rggobi'
** Removing '/usr/local/lib/R/library/rggobi'
** Restoring previous '/usr/local/lib/R/library/rggobi'
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