On Tue, Feb 28, 2017 at 2:47 PM, Duncan Murdoch <murdoch.dun...@gmail.com> wrote: > On 28/02/2017 5:17 PM, Patrick Schratz wrote: >> >> Thanks Duncan, that was the problem! Although the Rbuildignore entry >> pointed to the main dir > > > No, it contains patterns, not paths, and is matched "case-insensitively > against the file and directory names relative to the top-level package > source directory". Put ^ at the beginning if you want to refer to the main > dir. > > Hadley, reporting what gets omitted might be a good suggestion, but it might > report too much in a package with compiled code (the .o files will generally > be omitted; rgl has 51 of those in src...).
I like this idea. It could be done such that R CMD build lists the files omitted based solely on the content of .Rbuildignore, which I assume is also what Hadley meant. This way *.o files wouldn't be listed since they're omitted by the built-in rules of R CMD build itself. /Henrik > > Duncan Murdoch > > and my .bib file was lying under vignettes/... >> >> That Rbuildignore entry was a leftover when my .bib file was initially >> lying in the top directory and hence was throwing notes during R CMD >> check. >> >> Afterwards I used full paths in the vignette to specify the .bib >> location. This approach works fine until you submit to CRAN which of >> course cannot deal with full paths (and you forget about that you used a >> full path when releasing). >> >> @hadley >> Could be useful as most often you do not think of possible leftover >> entries in Rbuildignore... >> >> 2017-02-28 18:57 GMT+01:00 Duncan Murdoch <murdoch.dun...@gmail.com >> <mailto:murdoch.dun...@gmail.com>>: >> >> On 28/02/2017 10:44 AM, Patrick Schratz wrote: >> >> When building the vignette using R CMD Build or >> `devtools::build_vignette()` everything works fine. >> >> However, during R CMD check I get the following >> >> ** checking running R code from vignettes ...* >> * ‘sperrorest-vignette.Rmd’ using ‘UTF-8’ ... OK* >> * NONE* >> ** checking re-building of vignette outputs ... WARNING* >> *Error in re-building vignettes:* >> * ...* >> *pandoc-citeproc: Could not find Biblio.bib* >> *CallStack (from HasCallStack):* >> * error, called at src/Text/CSL/Pandoc.hs:224:39 in >> pandoc-citeproc-0.10.4.1-EdjBizYp62fCPHef3CymGR:Text.CSL.Pandoc* >> *pandoc: Error running filter /usr/local/bin/pandoc-citeproc* >> *Filter returned error status 1* >> *Error: processing vignette 'sperrorest-vignette.Rmd' failed with >> diagnostics:* >> *pandoc document conversion failed with error 83* >> *Execution halted* >> >> The .bib file is lying in `/vignettes`. There is a similar >> question on SO >> >> <http://stackoverflow.com/questions/41126556/any-way-of-attaching-csl-bib-files-by-using-knitcitations-package >> >> <http://stackoverflow.com/questions/41126556/any-way-of-attaching-csl-bib-files-by-using-knitcitations-package>> >> but >> the answer does not address the problem. >> When using full paths everything is fine. However, I cannot use >> full paths >> when submitting to CRAN. >> >> If you want to check on your own, please use the `dev` branch; >> https://github.com/pat-s/sperrorest/tree/dev >> <https://github.com/pat-s/sperrorest/tree/dev> >> >> pandoc-citeproc: stable 0.10.4.1 (bottled), HEAD >> pandoc: stable 1.19.2.1 (bottled), HEAD >> >> >> Your .Rbuildignore file says not to include Biblio.bib. Don't do >> that. >> >> Duncan Murdoch >> >> > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
