Correct - I should have thought that there is a Hadley-solution to this problem.
Thanks, Rainer > On 6 Sep 2018, at 09:25, Thierry Onkelinx <thierry.onkel...@inbo.be> wrote: > > Dear Rainer, > > It looks like you are using testthat. testthat has a skip_on_cran() function. > This will always skip the subsequent tests in the script unless the > environment variable NOT_CRAN is set. > > Best regards, > > Thierry > > > ir. Thierry Onkelinx > Statisticus / Statistician > > Vlaamse Overheid / Government of Flanders > INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE AND > FOREST > Team Biometrie & Kwaliteitszorg / Team Biometrics & Quality Assurance > thierry.onkel...@inbo.be <mailto:thierry.onkel...@inbo.be> > Havenlaan 88 bus 73, 1000 Brussel > www.inbo.be <http://www.inbo.be/> > > /////////////////////////////////////////////////////////////////////////////////////////// > To call in the statistician after the experiment is done may be no more than > asking him to perform a post-mortem examination: he may be able to say what > the experiment died of. ~ Sir Ronald Aylmer Fisher > The plural of anecdote is not data. ~ Roger Brinner > The combination of some data and an aching desire for an answer does not > ensure that a reasonable answer can be extracted from a given body of data. ~ > John Tukey > /////////////////////////////////////////////////////////////////////////////////////////// > > <https://www.inbo.be/> > > 2018-09-06 8:30 GMT+02:00 Rainer M Krug <rai...@krugs.de > <mailto:rai...@krugs.de>>: > > > > On 5 Sep 2018, at 20:20, Henrik Bengtsson <henrik.bengts...@gmail.com > > <mailto:henrik.bengts...@gmail.com> <mailto:henrik.bengts...@gmail.com > > <mailto:henrik.bengts...@gmail.com>>> wrote: > > > > I take a complementary approach; I condition on, my home-made, > > R_TEST_ALL variable. Effectively, I do: > > > > if (as.logical(Sys.getenv("R_TEST_ALL", "FALSE"))) { > > ... > > } > > > > and set R_TEST_ALL=TRUE when I want to run that part of the test. You > > can also imagine refined versions of this, e.g. R_TEST_SETS=foo,bar > > and test scripts with: > > > > if ("foo" %in% strsplit(Sys.getenv("R_TEST_SETS"), split="[, ]+")[[1]]) { > > ...makes no assumption > > } > > > > That avoids making assumptions on where the tests are submitted/run, > > may it be CRAN, Bioconductor, Travis CI, … > > Thanks Henrik - that sounds like a good idea. At the moment, I am checking > for the name of my machine, which is obviously not to robust. > > I will implement this before submission to CRAN. > > Thanks, > > Rainer > > > > > /Henrik > > > > On Wed, Sep 5, 2018 at 11:08 AM Spencer Graves > > <spencer.gra...@effectivedefense.org > > <mailto:spencer.gra...@effectivedefense.org> > > <mailto:spencer.gra...@effectivedefense.org > > <mailto:spencer.gra...@effectivedefense.org>>> wrote: > >> > >> > >> > >> On 2018-09-05 12:52, Gábor Csárdi wrote: > >>> On Wed, Sep 5, 2018 at 6:34 PM Spencer Graves > >>> <spencer.gra...@effectivedefense.org > >>> <mailto:spencer.gra...@effectivedefense.org> > >>> <mailto:spencer.gra...@effectivedefense.org > >>> <mailto:spencer.gra...@effectivedefense.org>>> wrote: > >>>> The fda package disables some tests on CRAN using: > >>>> > >>>> > >>>> if(!fda::CRAN()){ > >>>> test you don't want run on CRAN > >>>> } > >>> Seemingly this just checks for a couple of (5 by default) environment > >>> variables that match "^_R_": > >>> https://github.com/cran/fda/blob/0549e6a86aa144d8c2aade2d8704a269fb8a94ed/R/CRAN.R#L14 > >>> > >>> <https://github.com/cran/fda/blob/0549e6a86aa144d8c2aade2d8704a269fb8a94ed/R/CRAN.R#L14> > >>> > >>> <https://github.com/cran/fda/blob/0549e6a86aa144d8c2aade2d8704a269fb8a94ed/R/CRAN.R#L14 > >>> > >>> <https://github.com/cran/fda/blob/0549e6a86aa144d8c2aade2d8704a269fb8a94ed/R/CRAN.R#L14>> > >>> > >>> I am not sure if this is a good indication of the machine being a CRAN > >>> machine, I do set some of these > >>> occasionally on my machine. It would be great if CRAN machines could > >>> set a specific environment > >>> variable globally, e.g. ON_CRAN, or _R_ON_CRAN_, so people could skip > >>> these tests and examples > >>> easily. > >> > >> > >> Agreed. Before I wrote that function, I asked this list for > >> suggestions. The suggestion I got was, "Don't do it." I felt that was > >> not acceptable so wrote what I did. I think we need a better solution. > >> Spencer > >>> > >>> Gabor > >>> > >>>> > >>>> I've used this in other contexts with tests that are too long to > >>>> run on CRAN but that I want to run otherwise during "R CMD check". > >>>> > >>>> > >>>> Spencer Graves > >>>> > >>>> > >>>> On 2018-09-05 12:13, Peter Meissner wrote: > >>>>> Hey, > >>>>> > >>>>> Maybe webmockr (or something alike) can help: > >>>>> https://cran.r-project.org/web/packages/webmockr/index.html > >>>>> <https://cran.r-project.org/web/packages/webmockr/index.html> > >>>>> <https://cran.r-project.org/web/packages/webmockr/index.html > >>>>> <https://cran.r-project.org/web/packages/webmockr/index.html>> > >>>>> > >>>>> Best, Peter > >>>>> > >>>>> Rainer M Krug <rai...@krugs.de <mailto:rai...@krugs.de>> schrieb am > >>>>> Mi., 5. Sep. 2018, 15:38: > >>>>> > >>>>>> OK - thanks. I will than disable the checks for CRAN. > >>>>>> > >>>>>> Thanks, > >>>>>> > >>>>>> Rainer > >>>>>> > >>>>>> > >>>>>>> On 5 Sep 2018, at 15:37, Uwe Ligges <lig...@statistik.tu-dortmund.de > >>>>>>> <mailto:lig...@statistik.tu-dortmund.de>> > >>>>>> wrote: > >>>>>>> You should not run on CRAN. Note that the checks are done almost daily > >>>>>> oin several platforms, hence the API key is used for about 10 check > >>>>>> runs a > >>>>>> day. > >>>>>>> Best, > >>>>>>> Uwe Ligges > >>>>>>> > >>>>>>> > >>>>>>> > >>>>>>> On 05.09.2018 09:28, Rainer Krug wrote: > >>>>>>>> Hi > >>>>>>>> I have a package at GitHub (https://github.com/rkrug/ROriginStamp > >>>>>>>> <https://github.com/rkrug/ROriginStamp>) > >>>>>> which I am pre[paring for CRAN. > >>>>>>>> It creates a trusted timestamp using the API fro OriginStamp ( > >>>>>> https://originstamp.org/home <https://originstamp.org/home>) which > >>>>>> requires an API key. Now this API > >>>>>> should not be made public, as to much traffic through one API key will > >>>>>> lead > >>>>>> to it’s blocking. > >>>>>>>> I have stored the key encrypted in the travis.yml, and the package > >>>>>> passes all tests. > >>>>>>>> But if I send it to CRAN, it would fail the tests, as the api key is > >>>>>> not in the package itself. > >>>>>>>> I could disable all tests for CRAN which need the API key, but I > >>>>>>>> think > >>>>>> it would be better tu run the tests there as well (as an additional > >>>>>> check > >>>>>> to travis). > >>>>>>>> My question: > >>>>>>>> Is there a way of storing the API key encrypted, so that only the > >>>>>>>> CRAN > >>>>>> test servers can decrypt it, or is there another way can steal with > >>>>>> this? > >>>>>>>> Thanks, > >>>>>>>> Rainer > >>>>>>>> -- > >>>>>>>> Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation > >>>>>> Biology, UCT), Dipl. Phys. (Germany) > >>>>>>>> University of Zürich > >>>>>>>> Cell: +41 (0)78 630 66 57 > >>>>>>>> email: rai...@krugs.de <mailto:rai...@krugs.de> > >>>>>>>> Skype: RMkrug > >>>>>>>> PGP: 0x0F52F982 > >>>>>>>> ______________________________________________ > >>>>>>>> R-package-devel@r-project.org <mailto:R-package-devel@r-project.org> > >>>>>>>> mailing list > >>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >>>>>>>> <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > >>>>>> -- > >>>>>> Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation > >>>>>> Biology, UCT), Dipl. Phys. (Germany) > >>>>>> > >>>>>> University of Zürich > >>>>>> > >>>>>> Cell: +41 (0)78 630 66 57 > >>>>>> email: rai...@krugs.de <mailto:rai...@krugs.de> > >>>>>> Skype: RMkrug > >>>>>> > >>>>>> PGP: 0x0F52F982 > >>>>>> > >>>>>> > >>>>>> > >>>>>> ______________________________________________ > >>>>>> R-package-devel@r-project.org <mailto:R-package-devel@r-project.org> > >>>>>> mailing list > >>>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >>>>>> <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > >>>>>> > >>>>> [[alternative HTML version deleted]] > >>>>> > >>>>> ______________________________________________ > >>>>> R-package-devel@r-project.org <mailto:R-package-devel@r-project.org> > >>>>> mailing list > >>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >>>>> <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > >>>> ______________________________________________ > >>>> R-package-devel@r-project.org <mailto:R-package-devel@r-project.org> > >>>> <mailto:R-package-devel@r-project.org > >>>> <mailto:R-package-devel@r-project.org>> mailing list > >>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >>>> <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > >>>> <https://stat.ethz.ch/mailman/listinfo/r-package-devel > >>>> <https://stat.ethz.ch/mailman/listinfo/r-package-devel>> > >> > >> ______________________________________________ > >> R-package-devel@r-project.org <mailto:R-package-devel@r-project.org> > >> <mailto:R-package-devel@r-project.org > >> <mailto:R-package-devel@r-project.org>> mailing list > >> https://stat.ethz.ch/mailman/listinfo/r-package-devel > >> <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > >> <https://stat.ethz.ch/mailman/listinfo/r-package-devel > >> <https://stat.ethz.ch/mailman/listinfo/r-package-devel>> > > > > ______________________________________________ > > R-package-devel@r-project.org <mailto:R-package-devel@r-project.org> > > <mailto:R-package-devel@r-project.org > > <mailto:R-package-devel@r-project.org>> mailing list > > https://stat.ethz.ch/mailman/listinfo/r-package-devel > > <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > > <https://stat.ethz.ch/mailman/listinfo/r-package-devel > > <https://stat.ethz.ch/mailman/listinfo/r-package-devel>> > > -- > Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, > UCT), Dipl. Phys. (Germany) > > University of Zürich > > Cell: +41 (0)78 630 66 57 > email: rai...@krugs.de <mailto:rai...@krugs.de> <mailto:rai...@krugs.de > <mailto:rai...@krugs.de>> > Skype: RMkrug > > PGP: 0x0F52F982 > > > > > > -- > Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, > UCT), Dipl. Phys. (Germany) > > University of Zürich > > Cell: +41 (0)78 630 66 57 > email: rai...@krugs.de <mailto:rai...@krugs.de> > Skype: RMkrug > > PGP: 0x0F52F982 > > > > > ______________________________________________ > R-package-devel@r-project.org <mailto:R-package-devel@r-project.org> mailing > list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > > -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) University of Zürich Cell: +41 (0)78 630 66 57 email: rai...@krugs.de Skype: RMkrug PGP: 0x0F52F982
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