Hi Martin,
Thanks so much. Removing the version dependencies for those 3 packages fixed
the ERROR but I'm now having an issue with these WARNINGS:
Warning: replacing previous import ‘AnnotationDbi::select’ by ‘MASS::select’
when loading ‘multicross’
Warning: replacing previous import ‘Matrix::cov2cor’ by ‘stats::cov2cor’ when
loading ‘multicross’
Warning: replacing previous import ‘Matrix::toeplitz’ by ‘stats::toeplitz’ when
loading ‘multicross’
Warning: replacing previous import ‘nbpMatching::quantile’ by ‘stats::quantile’
when loading ‘multicross’
Warning: replacing previous import ‘Matrix::update’ by ‘stats::update’ when
loading ‘multicross’
Looking at a couple of forums I thought putting stats and MASS under "Depends"
in the DESCRIPTION file would address these warnings, but they still come up.
For reference, my DESCRIPTION file is –
Depends:
stats (>= 3.5.0),
MASS (>= 7.3-49),
Encoding: UTF-8
Imports:
nbpMatching (>= 1.5.1),
crossmatch (>= 1.3-1),
Matrix (>= 1.2-17),
org.Hs.eg.db (>= 3.6.0),
org.Mm.eg.db (>= 3.6.0),
org.Ce.eg.db (>= 3.6.0),
Seurat (>= 3.0.0),
AnnotationDbi (>= 1.42.1)
Please let me know what you'd recommend. Thank you again for taking the time to
offer your help, and am really grateful for your suggestions.
Sincerely,
Divyansh
On 9/23/19, 7:44 AM, "Martin Morgan" <mtmorgan.b...@gmail.com> wrote:
Probably the easiest 'solution' is to remove the version dependencies,
e.g., 'org.Hs.eg.db, org.Mm.eg.db, ...'.
I suspect that the root cause is that the Windows builders do not have the
correct version of these packages installed for the version of R in use,
perhaps because the version of the package BiocVersion (it should be 3.10.1 in
R-devel) is incorrect.
Martin Morgan
Bioconductor
On 9/23/19, 6:06 AM, "R-package-devel on behalf of Agarwal, Divyansh"
<r-package-devel-boun...@r-project.org on behalf of
divyansh.agar...@pennmedicine.upenn.edu> wrote:
Dear R developers community,
I’m trying to build and submit an R package to CRAN but keep getting
the following error:
Packages required and available but unsuitable versions:
'org.Hs.eg.db', 'org.Mm.eg.db', 'org.Ce.eg.db'
The DESCRIPTION file for my package includes the following:
Depends:
R (>= 3.5.0),
stats (>= 3.5.0),
MASS (>= 7.3-49),
Encoding: UTF-8
Imports:
nbpMatching (>= 1.5.1),
crossmatch (>= 1.3-1),
Matrix (>= 1.2-17),
org.Hs.eg.db (>= 3.6.0),
org.Mm.eg.db (>= 3.6.0),
org.Ce.eg.db (>= 3.6.0),
Seurat (>= 3.0.0),
AnnotationDbi (>= 1.42.1)
The details of the error log are here:
<https://win-builder.r-project.org/incoming_pretest/multicross_2.0.0_20190923_044655/>
I’ve tried a few different things such as specifying an R version under
“Depends” or updating the version for the “org.” packages to the latest version
(>=3.8) but I haven’t been able to resolve the error and warnings shown in the
error log. I would be really grateful to you if you could kindly advise a
potential solution for how to possibly fix this error.
Thanks a lot in advance!
Divyansh
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