Hello, I'm trying to submit my package to CRAN and received the following error message:
Error(s) in re-building vignettes: --- re-building ‘GPvecchia_vignette.Rmd’ using rmarkdown .../RcppArmadillo/include/armadillo_bits/subview_meat.hpp:1223:54: runtime error: reference binding to null pointer of type 'const unsigned int' ...//RcppArmadillo/include/armadillo_bits/access.hpp:26:100: runtime error: reference binding to null pointer of type 'unsigned int' ================================================================= ==40666==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x615000445e48 at pc 0x7faebceeaa54 bp 0x7ffd4d87a980 sp 0x7ffd4d87a970 READ of size 8 at 0x615000445e48 thread T0 #0 0x7faebceeaa53 in createUcpp(Rcpp::Vector<14, Rcpp::PreserveStorage>, Rcpp::Vector<14, Rcpp::PreserveStorage>, arma::Mat<double>, arma::Col<double>) /data/gannet/ripley/R/packages/incoming/GPvecchia.Rcheck/00_pkg_src/GPvecchia/src/U_NZentries.cpp:366 #1 0x7faebce84b2d in _GPvecchia_createUcpp /data/gannet/ripley/R/packages/incoming/GPvecchia.Rcheck/00_pkg_src/GPvecchia/src/RcppExports.cpp:118 I have very little clue what to do, above all because I don't know how to reproduce the error. Here is what I tried: 1. Using the r-devel-san container from rocker. When I'm building the package using > RD CMD build GPvecchia it tells me: Error: package or namespace load failed for ‘GPvecchia’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/tmp/RtmpRfO4Ad/Rinst96f4db205fe/00LOCK-GPvecchia/00new/GPvecchia/libs/GPvecchia.so': /tmp/RtmpRfO4Ad/Rinst96f4db205fe/00LOCK-GPvecchia/00new/GPvecchia/libs/GPvecchia.so: undefined symbol: __asan_option_detect_stack_use_after_return Here is the package Makevars (following the specification from https://www.stats.ox.ac.uk/pub/bdr/memtests/README.txt): ## optional CXX_STD = CXX11 #PKG_CFLAGS = $(SHLIB_OPENMP_CFLAGS) PKG_LIBS = $(SHLIB_OPENMP_CFLAGS) -lasan PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -fsanitize=address,undefined -fno-omit-frame-pointer -fno-sanitize=vptr PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) MAIN_LDFLAGS=-fsanitize=address,undefined -pthread F77 = gfortran -fsanitize=address FC = gfortran -fsanitize=address FCFLAGS = -g -O2 -mtune=native FFLAGS = -g -O2 -mtune=native 2. I also tried using r-hub and their platform with R compiled with the appropriate flags. However, their configuration does not support openMP. Please help, thanks! Marcin [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel