That's good to know. I'm still at a loss what to do though. How are you checking your packages on systems that are not available to you, other than using rhub?
Chances are if something from Bioconductor is required by one of the packages that I require, I can't get rid of it, right? Thanks, Christian On 1/7/20 3:06 PM, Gábor Csárdi wrote: > It is an R-hub bug: https://github.com/r-hub/rhub/issues/318 > > Gabor > > On Tue, Jan 7, 2020 at 2:05 PM Christian Martin Hennig > <christian.hen...@unibo.it> wrote: >> I should maybe add that I'm not even sure why I need Bioconductor, the >> package has: >> >> Imports: MASS, cluster, mclust, flexmix, prabclus, class, diptest, >> robustbase, kernlab, grDevices, graphics, methods, stats, utils, parallel >> Suggests: tclust, pdfCluster, EMMIXskew, mvtnorm >> >> Christian >> >> On 1/7/20 2:54 PM, Christian Martin Hennig wrote: >>> Hi there, >>> >>> I'm trying to track down some errors and issues of my fpc package. As I >>> can't reproduce any of these on my machine, I'm using rhub and docker. >>> >>> I'm getting Bioconductor related issues with both >>> >>> local_check_linux("fpc_2.2-3.tar.gz", image = "rhub/debian-clang-devel") >>> >>> and >>> >>> rhub::check("fpc_2.2-3.tar.gz", platform = "debian-clang-devel") >>> >>> namely locally: >>> >>> source('https://bioconductor.org/biocLite.R') >>> Error: With R version 3.5 or greater, install Bioconductor packages using >>> BiocManager; see https://bioconductor.org/install >>> Execution halted >>> Error in run(bash, c(file.path(wd, "rhub-linux.sh"), args), echo = TRUE, : >>> System command error >>> >>> ...and on rhub: >>> >>> 91<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L91>#> >>> Error: package or namespace load failed for 'BiocManager': >>> >>> 92<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L92>#> >>> .onAttach failed in attachNamespace() for 'BiocManager', details: >>> >>> 93<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L93>#> >>> call: if (version[, 1:2] != version) return(sprintf("version '%s' must >>> have two components, e.g., '3.7'", >>> >>> 94<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L94>#> >>> error: argument is of length zero >>> >>> 95<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L95>#> >>> Error: loading failed >>> >>> 96<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L96>#> >>> Execution halted >>> >>> 97<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L97>#> >>> ERROR: loading failed >>> >>> (To be totally honest, I'm not even sure whether the latter rhub issue >>> doesn't refer to the local docker thing as well, because this was linked >>> from an R-hub builder PREPERROR email, it also mentions docker, and all the >>> time indications don't make it unambiguously clear to what build they >>> refer.) >>> >>> Not sure what to do about this. Are there any other options apart from >>> rhub/docker to get wiser about my errors and issues (error on debian-clang >>> in a routine that shows nothing suspicious on my machine, additional issues >>> ATLAS<https://www.stats.ox.ac.uk/pub/bdr/Rblas/ATLAS/fpc.out> >>> MKL<https://www.stats.ox.ac.uk/pub/bdr/Rblas/MKL/fpc.out> >>> noLD<https://www.stats.ox.ac.uk/pub/bdr/noLD/fpc.out> >>> OpenBLAS)?<https://www.stats.ox.ac.uk/pub/bdr/Rblas/OpenBLAS/fpc.out> >>> >>> Yesterday I was able to check a prabclus noLD error on rhub, but no luck >>> yet with fpc. >>> >>> Thanks a lot, >>> >>> Christian >>> >>> -- >>> Christian Hennig >>> Dipartimento di Scienze Statistiche "Paolo Fortunati", >>> Universita di Bologna, phone +39 05120 98163 >>> christian.hen...@unibo.it<mailto:christian.hen...@unibo.it> >>> >>> [[alternative HTML version deleted]] >>> >>> ______________________________________________ >>> R-package-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel >> -- >> Christian Hennig >> Dipartimento di Scienze Statistiche "Paolo Fortunati", >> Universita di Bologna, phone +39 05120 98163 >> christian.hen...@unibo.it >> >> ______________________________________________ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel -- Christian Hennig Dipartimento di Scienze Statistiche "Paolo Fortunati", Universita di Bologna, phone +39 05120 98163 christian.hen...@unibo.it ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
