I’ve tried both ways (with and without a space after the backtick) and get the same error.
From: Max Turgeon <max.turg...@umanitoba.ca> Date: Friday, 1 May 2020 at 20:39 To: Matthew Young <m...@sanger.ac.uk>, "r-package-devel@r-project.org" <r-package-devel@r-project.org> Subject: Re: Rmarkdown vignette yields r inline warning on windows build [EXT] Since you're looking for suggestions and that's all I have: Could it be the space between the tick mark and the r? For example, does replacing ` round` with `round` (and all other instances) fix the issue? Max Turgeon Assistant Professor Department of Statistics Department of Computer Science University of Manitoba maxturgeon.ca [maxturgeon.ca]<https://urldefense.proofpoint.com/v2/url?u=http-3A__maxturgeon.ca&d=DwMF-g&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=XXcY8t_J1mVMCDTmi3629g&m=KD5hkiMRJXvOAV1srKNufKVz3MOekQAmaDIOmgmxB6A&s=AbhQu2y3TVl5oJQLLYAJXIyLZredpV9XsmkkeGsu1Js&e=> ________________________________ From: R-package-devel <r-package-devel-boun...@r-project.org> on behalf of Matthew Young <m...@sanger.ac.uk> Sent: May 1, 2020 2:24:40 PM To: r-package-devel@r-project.org Subject: [R-pkg-devel] Rmarkdown vignette yields r inline warning on windows build ******************************************************** Caution: This message was sent from outside the University of Manitoba. ******************************************************** I am trying to submit a package to CRAN that includes a vignette built using rmarkdown. It passes fine on the machines I have access to (ubuntu and osx). When I submit to CRAN using the form, it passes the Debian checks, but fails on windows with the following WARNING: ! Missing $ inserted. <inserted text> $ l.1030 You may need to add $ $ around a certain inline R expression `r ` I’m really not sure what is causing this error or how to debug it. I do not have any inline r expressions in my vignette (code here https://github.com/constantAmateur/SoupX/blob/devel/vignettes/pbmcTutorial.Rmd [github.com]<https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_constantAmateur_SoupX_blob_devel_vignettes_pbmcTutorial.Rmd&d=DwMF-g&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=XXcY8t_J1mVMCDTmi3629g&m=KD5hkiMRJXvOAV1srKNufKVz3MOekQAmaDIOmgmxB6A&s=1GWJLKyp3TJoM0X6-KWdkBEwtTer6JTOQKvF0d5iSPE&e=>). I do have back-ticked expression such as `round`, but they are not executed code. Can anyone suggest what might be causing this issue? Many thanks, Matthew -- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel [stat.ethz.ch]<https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dpackage-2Ddevel&d=DwMF-g&c=D7ByGjS34AllFgecYw0iC6Zq7qlm8uclZFI0SqQnqBo&r=XXcY8t_J1mVMCDTmi3629g&m=KD5hkiMRJXvOAV1srKNufKVz3MOekQAmaDIOmgmxB6A&s=aGl7Y0D-JZ1wiONI57CC8uOIDd4wneCjR-eCz6PZaVw&e=> -- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel