Hi Robert, Thank you for replying! I already had the biocViews: line on my description file - it seems it must be something else contributing to the issue.
Andrew On Tue, Apr 6, 2021 at 13:26 Robert M. Flight <rfligh...@gmail.com> wrote: > Andrew, > > I think if you want to include a Bioconductor dependency, then I think you > add the "biocViews:" line to your description file to enable bioconductor > package installation. > > See this answer on Bioinformatics stackexchange: > https://bioinformatics.stackexchange.com/a/3375/51 > > Hope that helps! > > -Robert > > On Tue, Apr 6, 2021 at 1:14 PM Andrew Dhawan <adha...@qmed.ca> wrote: > >> Thank you both very kindly - I have addressed both notes. I am still >> wondering though about the RankProd dependency error - any insight into >> this? >> >> Thanks! >> Andrew >> >> On Tue, Apr 6, 2021 at 11:58 AM Uwe Ligges < >> lig...@statistik.tu-dortmund.de> >> wrote: >> >> > >> > >> > On 06.04.2021 17:39, Patrick Giraudoux wrote: >> > > I had a similar problem with intepreting "notes" in pgirmess checks. >> > > Some are lethal and lead to rejection and some not (just informative >> > > comments). Fortunately Uwe has been kind enough to tell me what I >> missed >> > > (I thought that all notes were just "informative"). >> > > Would it be possible to call lethal notes "errors" to keep us aware >> that >> > > we must really do something with them and fix what is actually a >> problem? >> > >> > These are Notes as it may not be a serious issue or may be a false >> > positive, nevertheless, we like to get clean packages to CRAN. >> > >> > WARNINGs and ERRORs will never be accepted. >> > >> > The policies clearly say that significant Notes have to be addressed. >> > The only Note that is always acceptable is the CRAN maintainer Note >> > about the package maintainer's address. All other Notes should be fixed >> > generally or need manual attention in case of the really very few >> > exceptions. >> > >> > Best, >> > Uwe Ligges >> > >> > >> > >> > >> > > Best, >> > > Patrick >> > > >> > > >> > > Le 06/04/2021 à 17:33, Uwe Ligges a écrit : >> > >> Two Notes: >> > >> >> > >> >> > >> Found the following (possibly) invalid URLs: >> > >> URL: http://imagemagick.org/script/download.php (moved to >> > >> https://imagemagick.org/script/download.php) >> > >> From: inst/doc/vignette.html >> > >> Status: 200 >> > >> Message: OK >> > >> >> > >> >> > >> Please change http --> https, add trailing slashes, or follow moved >> > >> content as appropriate. >> > >> >> > >> * checking LazyData ... NOTE >> > >> 'LazyData' is specified without a 'data' directory >> > >> >> > >> Simply omit the field if you have no data. >> > >> >> > >> Best, >> > >> Uwe Ligges >> > >> >> > >> >> > >> >> > >> On 06.04.2021 16:27, Andrew Dhawan wrote: >> > >>> Dear all, >> > >>> >> > >>> I am a bit puzzled by this error for the sigQC package being >> uploaded >> > to >> > >>> CRAN. Checks on my end pass without issue. There is one error >> > >>> regarding the >> > >>> bioConductor dependency RankProd that comes up only on the Debian OS >> > >>> when >> > >>> checking. See here for further details: >> > >>> >> > >> https://win-builder.r-project.org/incoming_pretest/sigQC_0.1.22_20210406_110708/ >> > >>> >> > >>> >> > >>> I am not sure how to resolve this - it seems to me that the >> dependency >> > >>> *should* be available across platforms, and short of removing the >> > >>> dependency (which we rely on a fair bit), I'm not sure what we can >> do. >> > >>> >> > >>> Any thoughts or suggestions would be massively appreciated. >> > >>> >> > >>> Thank you so kindly! >> > >>> Andrew >> > >>> >> > >>> [[alternative HTML version deleted]] >> > >>> >> > >>> ______________________________________________ >> > >>> R-package-devel@r-project.org mailing list >> > >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel >> > >>> >> > >> >> > >> ______________________________________________ >> > >> R-package-devel@r-project.org mailing list >> > >> https://stat.ethz.ch/mailman/listinfo/r-package-devel >> > > >> > > >> > >> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-package-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-package-devel >> > -- *Andrew Dhawan, MD, **DPhil, **B.Math* [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
