Just delete the .html output from earlier runs before you run R CMD
build, and it will have no choice but to rebuild them.
Duncan Murdoch
On 10/12/2021 9:29 a.m., Eric Weine wrote:
Hello,
Sorry yes, I think that my initial post on stack overflow is a bit
misleading. I have checked the file that is built when I run "R CMD
build ...", and it looks like what is on CRAN. The question is why is
that different from when I run "devtools::build_vignette" or when I just
knit the vignette in RStudio. I know that "R CMD build" creates the
vignette each time from scratch. Should I update my R version or
something? I'm just trying to isolate the difference between R CMD build
and the other tools I have to knit vignette so I can ensure they are
consistent.
Thanks for the help,
Eric.
Date: Thu, 9 Dec 2021 16:52:09 -0500
From: Eric Weine <ericwein...@gmail.com <mailto:ericwein...@gmail.com>>
To: r-package-devel@r-project.org <mailto:r-package-devel@r-project.org>
Subject: [R-pkg-devel] R Vignette Knitting Issues in CRAN Release
Message-ID:
<CAO=DOOayQEiiunh=0hrzayidhjjgalq2ekrfnatsbbl0+yu...@mail.gmail.com
<mailto:0hrzayidhjjgalq2ekrfnatsbbl0%2byu...@mail.gmail.com>>
Content-Type: text/plain; charset="utf-8"
Hello,
I'm having an issue where my vignette created using R CMD build does not
match the vignette created using devtools::build_vignettes or when I
knit
with RStudio. I posted about this issue on stack overflow here
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623>>.
Originally I thought that this might be related to an omission in the
DESCRIPTION file, but this no longer seems to be the case. Here is a
repost
of my initial stack overflow post:
I recently released a vignette with version 1.1 of my R package. The Rmd
for the vignette can be found here
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd>>.
When I create the vignette locally, I see author information and the
table
of contents at the top of the vignette, as expected. However, when I
submitted this package to CRAN and the vignette was created there
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html>>,
I no longer see the table of contents or author information. Does anyone
know why this may be happening?
Thanks,
Eric.
[[alternative HTML version deleted]]
------------------------------
Date: Fri, 10 Dec 2021 11:41:31 +1300
From: Simon Urbanek <simon.urba...@r-project.org>
To: Eric Weine <ericwein...@gmail.com <mailto:ericwein...@gmail.com>>
Cc: r-package-devel@r-project.org <mailto:r-package-devel@r-project.org>
Subject: Re: [R-pkg-devel] R Vignette Knitting Issues in CRAN Release
Message-ID: <52ec72dc-b583-4d1b-97c3-979ec96ff...@r-project.org>
Content-Type: text/plain; charset="us-ascii"
Eric,
did you check the contents of the package file you submitted? The
session info in the vignette is quite old, and the build has been
packaged by you so I don't think it has anything to do with CRAN,
but to make sure, check the file you submitted.
Cheers,
Simon
> On Dec 10, 2021, at 10:52 AM, Eric Weine <ericwein...@gmail.com
<mailto:ericwein...@gmail.com>> wrote:
>
> Hello,
>
> I'm having an issue where my vignette created using R CMD build
does not
> match the vignette created using devtools::build_vignettes or
when I knit
> with RStudio. I posted about this issue on stack overflow here
>
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623>>.
> Originally I thought that this might be related to an omission in the
> DESCRIPTION file, but this no longer seems to be the case. Here
is a repost
> of my initial stack overflow post:
>
> I recently released a vignette with version 1.1 of my R package.
The Rmd
> for the vignette can be found here
>
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd>>.
> When I create the vignette locally, I see author information and
the table
> of contents at the top of the vignette, as expected. However, when I
> submitted this package to CRAN and the vignette was created there
>
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html>>,
> I no longer see the table of contents or author information. Does
anyone
> know why this may be happening?
>
> Thanks,
>
> Eric.
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-package-devel@r-project.org
<mailto:R-package-devel@r-project.org> mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>
>
------------------------------
Date: Fri, 10 Dec 2021 05:38:15 -0500
From: Duncan Murdoch <murdoch.dun...@gmail.com
<mailto:murdoch.dun...@gmail.com>>
To: Eric Weine <ericwein...@gmail.com <mailto:ericwein...@gmail.com>>
Cc: r-package-devel@r-project.org <mailto:r-package-devel@r-project.org>
Subject: Re: [R-pkg-devel] R Vignette Knitting Issues in CRAN Release
Message-ID: <02621081-6881-de33-2d8f-a5bcdcc3c...@gmail.com
<mailto:02621081-6881-de33-2d8f-a5bcdcc3c...@gmail.com>>
Content-Type: text/plain; charset="utf-8"; Format="flowed"
On 09/12/2021 5:41 p.m., Simon Urbanek wrote:
> Eric,
>
> did you check the contents of the package file you submitted? The
session info in the vignette is quite old, and the build has been
packaged by you so I don't think it has anything to do with CRAN,
but to make sure, check the file you submitted.
Yes, I think the tarball contained an old version of the .html file.
The timestamp on it is the same as on many other items in the tarball,
and that likely means it was put into inst/doc by the build process.
Eric, on Github I notice you have a committed copy of the HTML file in
the vignettes directory. This could be the cause of your problem.
Normally you should only have the vignette source in the vignettes
directory. I wouldn't be surprised if git the build process thinks the
.html file is newer than the .Rmd and doesn't rebuild it, putting a
stale copy into the tarball.
Duncan Murdoch
>
> Cheers,
> Simon
>
>
>> On Dec 10, 2021, at 10:52 AM, Eric Weine <ericwein...@gmail.com
<mailto:ericwein...@gmail.com>> wrote:
>>
>> Hello,
>>
>> I'm having an issue where my vignette created using R CMD build
does not
>> match the vignette created using devtools::build_vignettes or
when I knit
>> with RStudio. I posted about this issue on stack overflow here
>>
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623>>.
>> Originally I thought that this might be related to an omission
in the
>> DESCRIPTION file, but this no longer seems to be the case. Here
is a repost
>> of my initial stack overflow post:
>>
>> I recently released a vignette with version 1.1 of my R package.
The Rmd
>> for the vignette can be found here
>>
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd>>.
>> When I create the vignette locally, I see author information and
the table
>> of contents at the top of the vignette, as expected. However, when I
>> submitted this package to CRAN and the vignette was created there
>>
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html>>,
>> I no longer see the table of contents or author information.
Does anyone
>> know why this may be happening?
>>
>> Thanks,
>>
>> Eric.
>>
>> [[alternative HTML version deleted]]
>>
>> ______________________________________________
>> R-package-devel@r-project.org
<mailto:R-package-devel@r-project.org> mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-package-devel
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>
>>
>
> ______________________________________________
> R-package-devel@r-project.org
<mailto:R-package-devel@r-project.org> mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>
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