Hi,
I am seeking help on error messages from Debian-gcc check –
1. My package passed checks on windows and macos, but failed on debian-gcc
with testthat.R error. I don’t have a linux box, and was not able to check it
via r-hub-linux-platforms since some of bioc dependencies are not installed on
r-hub. What should I do for the error check, any ideas?
2. testthat.R runs pretty well on my macos machine. I am thinking error from
debian was caused by tempdir()? this is the code of how I created the temp
folder fd_out = as.character(paste0(tempdir(), "/", "outputs", "/")) . The
error will go away if I change the code to fd_out = tempdir() ?
3. Also, tempdir() is something like this
"/var/folders/_p/vkt5cmsn2559zqnyhpdwnnsr0000gn/T//RtmpUHe1uR" . I wonder if
the double slashes doesn’t recognized by linux?
Thanks,
Joan Zhang
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [157s/277s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(epitopR)
>
> test_check("epitopR")
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 0 ]
══ Skipped tests
═══════════════════════════════════════════════════════════════
• empty test (2)
══ Failed tests
════════════════════════════════════════════════════════════════
── Error (test-core_mut.R:10:3): test core_mut
────────────────────────────────
<vctrs_error_subscript_oob/vctrs_error_subscript/rlang_error/error/condition>
Error in `select(., -c(id, seq_num))`: Can't subset columns that don't
exist.
x Column `id` doesn't exist.
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