On 26.06.2023 02:52, Bernd.Gruber wrote:
Thanks, just to make sure:
In the policy I find the entry:
Additional_repositories:
You can use this for CRAN-style repositories. Not for other inds of
storage. In that case you need to decalre it as written text in the
Description field.
Best,
Uwe Ligges
The ‘Additional_repositories’ field is a comma-separated list of repository
URLs where the packages named in the other fields may be found. It is currently
used by R CMD check to check that the packages can be found, at least as source
packages (which can be installed on any platform).
And here I would have to provide an url that links to the tar.gz file of the
package, or can I also provide
The ‘Additional_repositories’ field is a comma-separated list of repository
URLs where the packages named in the other fields may be found. It is currently
used by R CMD check to check that the packages can be found, at least as source
packages (which can be installed on any platform).
github::green-striped-gecko/dartR.popgenomics
similar to the Remotes: field (which I think is not possible to use).
Thanks,
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From: Uwe Ligges <lig...@statistik.tu-dortmund.de>
Sent: Sunday, 25 June 2023 20:51
To: Bernd.Gruber <bernd.gru...@canberra.edu.au>
Cc: r-package-devel@r-project.org
Subject: Re: [R-pkg-devel] Questions regarding a new (seperated package) and
how to submit them to cran
On 25.06.2023 09:00, Bernd.Gruber wrote:
Hi,
Thanks for the advice.
Still not 100% sure if that is okay to submit to CRAN.
As mentioned I have new packages that have others in the suggest (and yes the
examples/tests run fine by making the dependent),
But if I have a package that is not yet on CRAN in the suggest I see that
running winbuilder.
Suggests or Enhances not in mainstream repositories:
dartR.sim
If it is not in a mainstream repo, you can declare where users can get
it from, see the explanation in the CRAN policies how to declare it.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'dartR.sim'
This is OK, once the former is explained.
Best,
Uwe Ligges
Can I explain when I submit that dartR.sim will be there (as mentioned the
examples run fine), but obviously is not yet on CRAN.
I assume the same would happen if I put the new packages in Enhances…
Regards, Bernd
From: Thierry Onkelinx
<thierry.onkel...@inbo.be<mailto:thierry.onkel...@inbo.be>>
Sent: Friday, June 23, 2023 5:51 PM
To: Simon Urbanek
<simon.urba...@r-project.org<mailto:simon.urba...@r-project.org>>
Cc: Bernd.Gruber <bernd.gru...@canberra.edu.au<mailto:bernd.gru...@canberra.edu.au>>;
r-package-devel@r-project.org<mailto:r-package-devel@r-project.org>
Subject: Re: [R-pkg-devel] Questions regarding a new (seperated package) and
how to submit them to cran
Dear Bernd,
You could contact the maintainer of the spatstat package. They did the same
thing (splitting a large package into several smaller ones) a few years ago.
Having the base package suggesting an add-on and the add-on depending on or
suggesting the base package might create an unwanted loop.
Best regards,
ir. Thierry Onkelinx
Statisticus / Statistician
Vlaamse Overheid / Government of Flanders
INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE AND
FOREST
Team Biometrie & Kwaliteitszorg / Team Biometrics & Quality Assurance
thierry.onkel...@inbo.be<mailto:thierry.onkel...@inbo.be<mailto:thierry.onkel...@inbo.be%3cmailto:thierry.onkel...@inbo.be>>
Havenlaan 88 bus 73, 1000 Brussel
www.inbo.be<http://www.inbo.be><http://www.inbo.be<http://www.inbo.be>>
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experiment died of. ~ Sir Ronald Aylmer Fisher
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Op vr 23 jun 2023 om 06:52 schreef Simon Urbanek
<simon.urba...@r-project.org<mailto:simon.urba...@r-project.org<mailto:simon.urba...@r-project.org%3cmailto:simon.urba...@r-project.org>>>:
Bernd,
the sequence in which you submit doesn't matter - the packages have to work regardless of the
sequence. Suggests means that the dependency is optional, not that it can break tests. You have
to skip the tests that cannot be run due to missing dependencies (see
1.1.3.1<http://1.1.3.1><http://1.1.3.1<http://1.1.3.1>> in R-exts)
Cheers,
Simon
On Jun 23, 2023, at 2:35 PM, Bernd.Gruber
<bernd.gru...@canberra.edu.au<mailto:bernd.gru...@canberra.edu.au<mailto:bernd.gru...@canberra.edu.au%3cmailto:bernd.gru...@canberra.edu.au>>>
wrote:
Hi,
I have a question regarding the separation of a package into smaller pieces (to
avoid long testing/installation times and more important to avoid to many
dependencies)
I am the maintainer of an R package (dartR) which has grown and is now at the
limit in terms of testing/run time and also dependencies. To further develop
the package we started to break the package into smaller packages namely
Two core packages (dartR.base and dartR.data) and here dartR.base has
dartR.data in the depends. (dartR.base is 60% of the previous package) and
dartR.data is our data.package for test data (dartR.data is already on CRAN)
Next to the two core packages we also have 3 more addon packages that deal with
specialised analysis
dartR.sim
dartR.spatial
dartR.popgenomics.
Those packages depend on dartR.base and dartR.data.
All addon packages and core packages should have the other addon packages as
suggests, hence here comes the question.
How do I submit the packages? All of them at once? Or step by step.
If I submit step by step (e.g. dartR.base) it obviously cannot have the other
dartR addon packages as suggests (cannot be tested and will break the CRAN
tests).
So would be the correct way to:
Submit dartR.base (without dartR.sim, dartR.spatial and dartR.popgenomics in
the suggest.)
Then submit dartR.sim, then dartR.spatial and finally dartR.popgenomics (all
without suggests of the other packages)
And finally update all packages (only their description file and add the
suggests once they are on CRAN).
Hope that makes sense and thanks in advance,
Bernd
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