Hi Ivan I have decided to clean up the existing package using a branch, as you suggested. The branch I've created is available at: https://github.com/WoutersResearchGroup/R-IO-PS/tree/CRAN-prep.
I've cleaned, built and checked this branch package but I get one error and 2 notes (one is the new submission note). The error is related to the example I'm running. I suspect it might be due to the way I am trying to import the ExampleTradeData. Here is the error and note: * checking examples ... ERROR Running examples in ‘iopspackage-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: IOPS > ### Title: IOPS > ### Aliases: IOPS > > ### ** Examples > > # Load the example data > ExampleTradeData <- read.csv(system.file("extdata","ExampleTradeData.csv",package="iopspackage")) > > # Create a temporary directory > temp_dir <- tempfile() > dir.create(temp_dir) > > # Set the working directory to the temporary directory > old_dir <- setwd(temp_dir) > > # Then use it in your function > IOPS( + CountryCode = 710, + tradeData = ExampleTradeData, + ComplexMethod = "reflections", + iterCompl = 5, + GVCMapping = NULL, + tradedigit = 6 + ) Selected country: ZAF Export data 6-digit summation complete Trade data successfully imported M-matrices calculated RCA calculated Starting calculation of complexity measures using the 'reflections' method Warning in complexity_measures(Mbin, method = "reflections", iterations = iterCompl) : 'iterations' was changed to 'iterations + 1' to work with an even number of iterations Killed * checking HTML version of manual ... NOTE Skipping checking HTML validation: no command 'tidy' found Note that I also updated the iopspackage2.0.R as you suggested, and I did re-run roxygen before building and checking (using roxygen2::roxygenize()). All the updated folders are in the "CRAN-prep" branch (link provided above). Regards Christiaan On Sun, 17 Dec 2023 at 16:06, Ivan Krylov <krylov.r...@gmail.com> wrote: > On Sun, 17 Dec 2023 15:29:34 +0200 > Christiaan Pieterse <pietie.cjp.1...@gmail.com> wrote: > > > But, I've uploaded the newly created package as discussed in my first > > email, available at: > > https://github.com/ChristiaanPieterse/iopspackage2.1.0 > > Are you sure it wouldn't be better to clean up the existing package > instead of creating unrelated forks? If you're afraid of breaking > something that works, do the work on a separate branch > <https://git-scm.com/book/en/v2/Git-Branching-Branches-in-a-Nutshell> > until it both works as well as your current repo currently does *and* > passes R CMD check --as-cran. > > > * checking CRAN incoming feasibility ... [25s] NOTE > > Maintainer: 'C.J Pieterse <pietie.cjp.1...@gmail.com>' > > New submission > > "New submission" is to be expected. > > > Unknown, possibly misspelled, fields in DESCRIPTION: > > 'Exports' > > "Writing R Extensions" doesn't define a field named "Exports". The > exports are declared in the NAMESPACE file. Since you're using > roxygen2, use its @export tag to export your functions and remove the > Exports: field. > > > * checking whether package 'iopspackage' can be installed ... [27s] > > WARNING Found the following significant warnings: > > Warning: package 'Rcpp' was built under R version 4.3.2 > > This is probably not a problem with your package (but may be a problem > with the way the machine running R CMD check is set up). > > > * checking dependencies in R code ... NOTE > > Namespaces in Imports field not imported from: > > 'openxlsx' 'roxygen2' 'tibble' > > All declared Imports should be used. > > > * checking R code for possible problems ... [12s] NOTE > > IOPS: no visible global function definition for 'createWorkbook' > > IOPS: no visible global function definition for 'addWorksheet' > > IOPS: no visible global function definition for 'writeData' > > IOPS: no visible global function definition for 'saveWorkbook' > > Undefined global functions or variables: > > addWorksheet createWorkbook saveWorkbook writeData > > Are you sure you should be importing roxygen2? You only run > roxygenise() before running R CMD build in order to generate > man/*.Rd and NAMESPACE; I don't think it's used after that. > > If you don't use functions from tibble, there's no need to import it > or depend on it either. I also don't see you directly using Rcpp, but > there's no warning about it for some reason. > > Use the @importFrom tags to import individual functions that you > actually use (i.e. createWorkbook and friends). See > <https://cran.r-project.org/doc/manuals/R-exts.html#Package-namespaces> > for more information on importing. > > Also, remove all library() calls from R/iopspackage2.R. Packages live > in namespaces, not in the global environment; your package should rely > upon the dependency information in DESCRIPTION and NAMESPACE (the > latter generated by roxygen2) for its dependencies. > > > > data(ExampleTradeData) > > Warning in data(ExampleTradeData) : > > data set 'ExampleTradeData' not found > > There's no 'data' directory and no file named ExampleTradeData.* in it. > Data for use by the function data() should be prepared as described in > <https://cran.r-project.org/doc/manuals/R-exts.html#Data-in-packages>. > If you want to use files under inst/extdata, you have to read them > manually: > > ETD <- read.csv(system.file( > file.path('extdata','ExampleTradeData.csv'), > package = 'iopspackage' > )) > > > * checking for detritus in the temp directory ... NOTE > > Found the following files/directories: > > 'lastMiKTeXException' > > Is this on R-hub? This usually happens on R-hub and doesn't indicate a > problem with your package. > > > #' temp_dir <- tempdir() > > #' > > #' # Set the working directory to a temporary directory > > #' setwd(temp_dir) > <...> > > #' # Clean up the temporary directory > > #' unlink(temp_dir, recursive = TRUE) > > Please make it a subdirectory of the session temporary directory: > > temp_dir <- tempfile() > dir.create(temp_dir) > ... > > Removing the session temporary directory is not as bad as directly > overwriting user data (it's all going away after the process is shut > down), but quite a lot of parts of R and other packages rely on > tempdir() being a directory that exists, not to mention that there > could be other temporary files in use by other packages. > > -- > Best regards, > Ivan > [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel