В Wed, 5 Feb 2025 19:52:57 -0800 Zhian Kamvar <zkam...@gmail.com> пишет:
> Mismatches for methods registered for non-generic: > is: > function(object, class2) > is.genind: > function(x) > > is: > function(object, class2) > is.genpop: > function(x) > > sample: > function(x, size, replace, prob) > sample.haploGen: > function(x, n) Neither methods::is nor base::sample are S3 generics, so these S3 method registrations are not needed: https://github.com/thibautjombart/adegenet/blob/e4874e73f0d39ebdddeca05b7eb1359fab771aaf/NAMESPACE#L50-L51 https://github.com/thibautjombart/adegenet/blob/e4874e73f0d39ebdddeca05b7eb1359fab771aaf/NAMESPACE#L73 In other words, calling is(new("genind", ...)) or sample(haploGen(...)) won't dispatch to is.genind() or sample.haploGen() anyway; these functions are probably intended to be called by their full names. Removing these lines and re-generating NAMESPACE should help: https://github.com/thibautjombart/adegenet/blob/e4874e73f0d39ebdddeca05b7eb1359fab771aaf/R/basicMethods.R#L546 https://github.com/thibautjombart/adegenet/blob/e4874e73f0d39ebdddeca05b7eb1359fab771aaf/R/basicMethods.R#L553 https://github.com/thibautjombart/adegenet/blob/e4874e73f0d39ebdddeca05b7eb1359fab771aaf/R/haploGen.R#L529 -- Best regards, Ivan ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
