Josh,
You have stumbled on the "so many R packages, no way we can turn them
all into Ubuntu packages" problem. In general, you should be able to
compile packages with the install.packages commands. However, some
packages utilize other libraries that are not needed by the core R
program. In your case, it is the GDAL library.
The solution to this problem is the following line:
> ./configure: line 1311: gdal-config: command not found
The trick is to find what Ubuntu package contains that file. A useful
website is http://packages.ubuntu.com/. On that page there is a "Search
the contents of packages" section, and putting in gdal-config reveals
that the needed package is libgdal1-dev. A 'sudo apt-get install
libgdal1-dev' will download about 20 mb worth of ubuntu packages, but
you should now be able to install the rgdal package (at least I was
able). Note, you will need to start a fresh R session to install the
rgdal package after updating hardy.
Hope this helps,
Michael
Josh Harmsen wrote:
Hi All,
Not a new R user, but new to R with Linux, specifically Ubuntu Hardy
Heron 8.04 64bit.
I have had success installing common packages using the typical R
interface (in Linux), but have had problems installing less common
packages like (rgdal) and (RSAGA) that are not loaded with R. I'm
wondering if there are any tricks to these libraries that won't
install, from reading the errors it looks like I need to
add/edit/create some directories?
I get this error when I try to install (rgdal)
install.packages()
--- Please select a CRAN mirror for use in this session ---
Loading Tcl/Tk interface ... done
Warning in install.packages() :
argument 'lib' is missing: using
'/home/josh/R/x86_64-pc-linux-gnu-library/2.7'
trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/rgdal_0.5-26.tar.gz'
Content type 'application/x-gzip' length 4430424 bytes (4.2 Mb)
opened URL
==================================================
downloaded 4.2 Mb
* Installing *source* package 'rgdal' ...
gdal-config: gdal-config
./configure: line 1311: gdal-config: command not found
The gdal-config script distributed with GDAL could not be found.
If you have not installed the GDAL libraries, you can
download the source from http://www.gdal.org/
If you have installed the GDAL libraries, then make sure that
gdal-config is in your path. Try typing gdal-config at a
shell prompt and see if it runs. If not, use:
--configure-args='--with-gdal-config=/usr/local/bin/gdal-config' echo
with appropriate values for your installation.
ERROR: configuration failed for package 'rgdal'
** Removing '/home/josh/R/x86_64-pc-linux-gnu-library/2.7/rgdal'
** Restoring previous '/home/josh/R/x86_64-pc-linux-gnu-library/2.7/rgdal'
The downloaded packages are in
/tmp/RtmplzwwUl/downloaded_packages
Warning message:
In install.packages() :
installation of package 'rgdal' had non-zero exit status
update.packages(lib.loc = "/usr/local/lib/R/site-library")
install.packages(rgdal)
Error in install.packages(rgdal) : object "rgdal" not found
Thanks,
Josh
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Dr. Michael A. Rutter
School of Science
Penn State Erie, The Behrend College
Station Road
Erie, PA 16563
http://math.bd.psu.edu/faculty/rutter
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