Thank you to Dr. Dirk I think I find the problem. I search in the output file of strace and I found in some place "(Permission denied)" and it show this path /usr/local/lib/R/library/base/R/base to be the origin of the problem..
Then I : sudo chmod a+x -R library on the /usr/local/lib/R path, and it seems that works. I hope that was the problem... I am still puzzle what causes it, because I make compilation a lot of times before with other R versions and it is the first time I got this problem. El dom, 31-01-2010 a las 22:34 -0600, Dirk Eddelbuettel escribió: > On 31 January 2010 at 23:02, Kenneth Roy Cabrera Torres wrote: > | Dear R users: > | > | Maybe it is a silly question, but I'm don't understand what am I doing > | wrong (I make the same steps, and it works). > > Here is a simple suggestion: go to > > http://cran.r-project.org/bin/linux/ubuntu/ > > and read how to obtain pre-built current binaries for your Ubuntu system. > > | In a new karmik koala ubuntu installation I compile the last patched > | 2.10.1 version of R (r51070). > | > | Every thing was right (I install all the dev libraries I need). > | > | First I type: > | > | ./configure --enable-R-shlib > > We use more configuration that that so our packages are more complete. > > | And I obtain: > | > | R is now configured for i686-pc-linux-gnu Source directory: . > | Installation directory: /usr/local > | C compiler: gcc -std=gnu99 -g -O2 > | Fortran 77 compiler: gfortran -g -O2 > | C++ compiler: g++ -g -O2 > | Fortran 90/95 compiler: gfortran -g -O2 > | Obj-C compiler: gcc -g -O2 > | Interfaces supported: X11, tcltk > | External libraries: readline, ICU > | Additional capabilities: PNG, JPEG, TIFF, NLS, cairo > | Options enabled: shared R library, shared BLAS, R profiling, > | Java > | Recommended packages: yes > > Looks fine, though we end with better BLAS support, profiling support, ... > > Source directory: . > Installation directory: /usr > > C compiler: gcc -std=gnu99 -g -O2 > Fortran 77 compiler: gfortran -g -O2 > > C++ compiler: g++ -g -O2 > Fortran 90/95 compiler: gfortran -g -O2 > Obj-C compiler: > > Interfaces supported: X11, tcltk > External libraries: readline, BLAS(generic), LAPACK(generic) > Additional capabilities: PNG, JPEG, TIFF, NLS, cairo > Options enabled: shared R library, R profiling, memory profiling, > Java > > Recommended packages: no > > | Then I type "make", > | following with: > | sudo make install. > | > | Then when I try to call R it shows me this message: > | > | Fatal error: unable to open the base package > | > | But if I work as superuser, like "sudo R", everything works fine. > | > | I understand that it is a privileges issue, but where and how can I fix > | the problem? > > That is close to impossible to say based on the information you provided. > Some files must have gotten root access when you meant to have only user > access. You could use a tool like strace to see exactly where the access > fails. > > Or you can simply take advantage of the fact that others have volunteered to > provide you with timely updates of proper packages you could use. Your pick. > > Dirk > > | Thank you for your help. > | > | Sorry for the newbee question. > | > | Kenneth > | > | _______________________________________________ > | R-SIG-Debian mailing list > | [email protected] > | https://stat.ethz.ch/mailman/listinfo/r-sig-debian > _______________________________________________ R-SIG-Debian mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-debian
