On 12/20/2010 09:53 AM, ottorino wrote:
Dear all,
I having this problem on my laptop.
It was caused by my clumsy attempts to upgrade the system.
As I wrote here,
(http://www.mail-archive.com/[email protected]/msg01364.html)
I was trying to solve the same problem with JAGS/rjags on my laptop.
After typing R in a terminal I'm currently get the following:
R version 2.9.0 (2009-04-17)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
......some unrelevant lines
Loading required package: graphics
Loading required package: stats
Error in dyn.load(file, DLLpath = DLLpath, ...) :
impossibile caricare libreria condivisa
'/usr/local/lib/R/library/stats/libs/stats.so':
/usr/local/lib/R/library/stats/libs/stats.so: undefined symbol:
_gfortran_pow_r8_i4
Errore: package 'stats' could not be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
impossibile caricare libreria condivisa
'/usr/local/lib/R/library/stats/libs/stats.so':
/usr/local/lib/R/library/stats/libs/stats.so: undefined symbol:
_gfortran_pow_r8_i4
Durante l'avvio - Warning message:
package stats in options("defaultPackages") was not found
What I did before:
sudo nano /etc/apt/sources.list
The file sources.list contains the following lines
######################################################
deb http://it.archive.ubuntu.com/ubuntu/ lucid main restricted
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid main restricted
deb http://it.archive.ubuntu.com/ubuntu/ lucid-updates main restricted
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid-updates main
restricted
deb http://it.archive.ubuntu.com/ubuntu/ lucid universe
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid universe
deb http://it.archive.ubuntu.com/ubuntu/ lucid-updates universe
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid-updates universe
deb http://it.archive.ubuntu.com/ubuntu/ lucid multiverse
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid multiverse
deb http://it.archive.ubuntu.com/ubuntu/ lucid-updates multiverse
deb-src http://it.archive.ubuntu.com/ubuntu/ lucid-updates multiverse
deb http://security.ubuntu.com/ubuntu lucid-security main restricted
deb-src http://security.ubuntu.com/ubuntu lucid-security main restricted
deb http://security.ubuntu.com/ubuntu lucid-security universe
deb-src http://security.ubuntu.com/ubuntu lucid-security universe
deb http://security.ubuntu.com/ubuntu lucid-security multiverse
deb-src http://security.ubuntu.com/ubuntu lucid-security multiverse
deb http://cran.stat.unipd.it/bin/linux/ubuntu lucid/
deb http://it.archive.ubuntu.com/ubuntu/ lucid-backports main restricted
universe
######################################################
Then I did:
sudo apt-get update
sudo apt-get upgrade
and then a lot of clumsy commands to try to recover from the situation.
I can post them all if necessary, but basically they were:
sudo apt-get remove r-base
sudo apt-get remove r-base-core
sudo apt-get install r-base-core
sudo apt-get remove r-base-core r-dev
sudo apt-get install r-base-core r-dev r-recommended
and similar attempts.
Since I was getting some error from R I probaly worsen th situation
typing:
sudo apt-get install libmpc
sudo apt-get install r-devel
whereis libgfortran
whereis libgfortran.so.2
sudo apt-get install libgfortran3
sudo apt-get install libgfortran3-dev
sudo apt-get install libgfortran2
sudo apt-get install libgfortran3-dbg
R
sudo apt-get remove libgfortran3-dbg
sudo apt-get install build-essential
sudo apt-get install r-base-core r-doc-info r-mathlib r-recommended
R
sudo apt-get install r-base-dev
sudo apt-get install f2c
R
sudo apt-get install r-base-core r-doc-info r-mathlib r-recommended
sudo apt-get remove r-base-core r-doc-info r-mathlib r-recommended
r-base-dev
sudo apt-get install r-base-core r-doc-info r-mathlib r-recommended
r-base-dev
R
sudo apt-get remove f2c
sudo apt-get install g++ gfortran
sudo apt-get autoremove
I do not exactly remember why I gave the above commands, since all the
above happened about one month ago, but I remember that the problem was
caused by libgfortran.so.2
Could please someone help me to escape from this situation ?
Thanks
The first thing to diagnose is why you have this this line in your
sources.list:
> deb http://cran.stat.unipd.it/bin/linux/ubuntu lucid/
Yet, the version of R you are using is old, 2.9.0. It appears that the
line is correct. I would suggest launching Synaptic and seeing which
versions of r-base are available. If you search for 'r-base' within
Synaptic, right click on the package for 'Properties'. Click the
versions tab, and there should be two listed. See if you can install
2.12 from there.
If you are using JAGS, check out my Launchpad PPA:
https://launchpad.net/~marutter/+archive/rrutter
It has a package for JAGS available for lucid. That might help.
Hope this helps,
Michael
--
Dr. Michael A. Rutter
School of Science
Penn State Erie, The Behrend College
Station Road
Erie, PA 16563
http://math.bd.psu.edu/faculty/rutter
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