Sorry, I mis-typed. I have squeeze, not sarge. Debian 6.0, which as far as I know, is latest stable.
--Jim On Tue, Jul 24, 2012 at 12:18 PM, Michael Dewey <[email protected]> wrote: > At 19:58 24/07/2012, Jim Kusznir wrote: >> >> Hello: >> >> I've been trying for days now to get igraph working on a debian sarge >> install. There does not appear to be any pre-built packages, and when >> I try and install within R, it blows up on the final linking, claiming >> its unable to find libgfortran (which IS installed, and IS working for >> all other users of the compiler). > > > You do seem to have rather an old version of Debian. I suspect you are going > to have increasing difficulty installing packages in it. You may have to > bite the bullet and persuade your IT support to update. > > >> I started up R and ran: install.packages("igraph"). It compiled for a >> good long while (including many gfortran compile calls), and >> eventually ended with: >> >> ++ -shared -o igraph.so DensityGrid.o DensityGrid_3d.o NetDataTypes.o >> NetRoutines.o adjlist.o amd_1.o amd_2.o amd_aat.o amd_control.o >> amd_defaults.o amd_dump.o amd_info.o amd_order.o amd_post_tree.o >> amd_postorder.o amd_preprocess.o amd_valid.o arpack.o array.o atlas.o >> attributes.o basic_query.o bfgs.o bigint.o bignum.o bipartite.o blas.o >> bliss.o bliss_eqrefhash.o bliss_graph.o bliss_heap.o bliss_orbit.o >> bliss_partition.o bliss_timer.o bliss_utils.o cattributes.o >> centrality.o cliques.o clustertool.o cocitation.o cohesive_blocks.o >> colamd.o community.o complex.o components.o conversion.o cores.o >> cs_add.o cs_amd.o cs_chol.o cs_cholsol.o cs_compress.o cs_counts.o >> cs_cumsum.o cs_dfs.o cs_dmperm.o cs_droptol.o cs_dropzeros.o cs_dupl.o >> cs_entry.o cs_ereach.o cs_etree.o cs_fkeep.o cs_gaxpy.o cs_happly.o >> cs_house.o cs_ipvec.o cs_leaf.o cs_load.o cs_lsolve.o cs_ltsolve.o >> cs_lu.o cs_lusol.o cs_malloc.o cs_maxtrans.o cs_multiply.o cs_norm.o >> cs_permute.o cs_pinv.o cs_post.o cs_print.o cs_pvec.o cs_qr.o >> cs_qrsol.o cs_randperm.o cs_reach.o cs_scatter.o cs_scc.o cs_schol.o >> cs_spsolve.o cs_sqr.o cs_symperm.o cs_tdfs.o cs_transpose.o >> cs_updown.o cs_usolve.o cs_util.o cs_utsolve.o decomposition.o >> dgetv0.o distances.o dlaqrb.o dmout.o dnaitr.o dnapps.o dnaup2.o >> dnaupd.o dnconv.o dneigh.o dneupd.o dngets.o dqueue.o drl_graph.o >> drl_graph_3d.o drl_layout.o drl_layout_3d.o drl_parse.o dsaitr.o >> dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o >> dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dvout.o eigen.o >> error.o evolver_cit.o f2c_dummy.o fast_community.o feedback_arc_set.o >> flow.o foreign-dl-lexer.o foreign-dl-parser.o foreign-gml-lexer.o >> foreign-gml-parser.o foreign-graphml.o foreign-lgl-lexer.o >> foreign-lgl-parser.o foreign-ncol-lexer.o foreign-ncol-parser.o >> foreign-pajek-lexer.o foreign-pajek-parser.o foreign.o forestfire.o >> fortran_intrinsics.o games.o gengraph_box_list.o >> gengraph_degree_sequence.o gengraph_graph_molloy_hash.o >> gengraph_graph_molloy_optimized.o gengraph_mr-connected.o >> gengraph_powerlaw.o gengraph_random.o glpapi01.o glpapi02.o glpapi03.o >> glpapi04.o glpapi05.o glpapi06.o glpapi07.o glpapi08.o glpapi09.o >> glpapi10.o glpapi11.o glpapi12.o glpapi13.o glpapi14.o glpapi15.o >> glpapi16.o glpapi17.o glpapi18.o glpapi19.o glpavl.o glpbfd.o glpbfx.o >> glpcpx.o glpdmp.o glpdmx.o glpenv01.o glpenv02.o glpenv03.o glpenv04.o >> glpenv05.o glpenv06.o glpenv07.o glpenv08.o glpfhv.o glpgmp.o glphbm.o >> glpini01.o glpini02.o glpios01.o glpios02.o glpios03.o glpios04.o >> glpios05.o glpios06.o glpios07.o glpios08.o glpios09.o glpios10.o >> glpios11.o glpios12.o glpipm.o glpk_support.o glplib01.o glplib02.o >> glplib03.o glplpf.o glplpx01.o glplpx02.o glplpx03.o glpluf.o glplux.o >> glpmat.o glpmpl01.o glpmpl02.o glpmpl03.o glpmpl04.o glpmpl05.o >> glpmpl06.o glpmps.o glpnet01.o glpnet02.o glpnet03.o glpnet04.o >> glpnet05.o glpnet06.o glpnet07.o glpnet08.o glpnet09.o glpnpp01.o >> glpnpp02.o glpnpp03.o glpnpp04.o glpnpp05.o glpqmd.o glprgr.o >> glprng01.o glprng02.o glpscf.o glpscl.o glpsdf.o glpspm.o glpspx01.o >> glpspx02.o glpsql.o glpssx01.o glpssx02.o glptsp.o gml_tree.o heap.o >> igraph_buckets.o igraph_estack.o igraph_fixed_vectorlist.o >> igraph_grid.o igraph_hashtable.o igraph_heap.o igraph_hrg.o >> igraph_hrg_types.o igraph_marked_queue.o igraph_psumtree.o >> igraph_set.o igraph_stack.o igraph_strvector.o igraph_trie.o infomap.o >> infomap_FlowGraph.o infomap_Greedy.o infomap_Node.o interrupt.o >> iterators.o ivout.o lapack.o layout.o matching.o math.o matrix.o >> memory.o microscopic_update.o mixing.o motifs.o operators.o >> optimal_modularity.o other.o pottsmodel_2.o progress.o qsort.o >> qsort_r.o random.o revolver_cit.o revolver_grow.o revolver_ml_cit.o >> rinterface.o scg.o scg_approximate_methods.o scg_exact_scg.o >> scg_kmeans.o scg_optimal_method.o scg_utils.o second.o separators.o >> spanning_trees.o sparsemat.o spectral_properties.o spmatrix.o >> st-cuts.o statusbar.o structural_properties.o structure_generators.o >> sugiyama.o topology.o type_indexededgelist.o types.o vector.o >> vector_ptr.o version.o visitors.o walktrap.o walktrap_communities.o >> walktrap_graph.o walktrap_heap.o zeroin.o -lxml2 -lgmp -lgfortran -lm >> -llapack -lblas -lgfortran -lm -L/usr/lib64/R/lib -lR >> /usr/bin/ld: >> /usr/lib/gcc/x86_64-linux-gnu/4.4.5/libstdc++.a(functexcept.o): >> relocation R_X86_64_32 against `std::bad_typeid::~bad_typeid()' can >> not be used when making a shared object; recompile with -fPIC >> /usr/lib/gcc/x86_64-linux-gnu/4.4.5/libstdc++.a: could not read >> symbols: Bad value >> collect2: ld returned 1 exit status >> make: *** [igraph.so] Error 1 >> >> >> Previously, I kept getting errors about -lgfortran not found. In the >> process of writing this e-mail and trying things, I attempted to build >> a deb from source I found on the ppa for igraph. After doing that, the >> error changed to the above, which I don't know if its better or worse >> than my original error... >> >> --Jim >> >> _______________________________________________ >> R-SIG-Debian mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-debian > > > Michael Dewey > [email protected] > http://www.aghmed.fsnet.co.uk/home.html > _______________________________________________ R-SIG-Debian mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-debian
