Solved! Upgraded to 2.15, working better. My shared servers just running wrong R version, sorry noise. Thank you for your input.
h On Mon, Aug 27, 2012 at 08:10:20AM -0500, Dirk Eddelbuettel wrote: > > On 27 August 2012 at 15:20, Henri Losoi wrote: > | Hallo! > | > | @Johannes: Nein, ich habe das nicht gemacht [1]. Jakson Aquino, der Autor > | des Vimcom, hat Ubuntu 12.04 mit R 12.15 benutzt, kein Problem mit noexec. > | > | @ALL: The author of Vimcom was unable to comment about the problem > | with R 2.11. He has only tested R 2.15, not 2.11 that I am running. > > Why would you want to run R 2.11 which is two years out of date? > > Why do you expect us to support an outdated version? > > Dirk > > | I consulted some people in Freenode's channels such as R and Vim where we > | spotted some errors with built-vars [2]. For example, the "-lpthreads" > | -flag missing on the line 15 of the latter example and some err dumps > | [3], also some in my twitter -account close to the tweets. > | > | We are now stuck to the last err-dump [3], apparently a problem with > | linking and gcc. If you know the solution to the problem, please, send > | the patches to Jakson [4][5] because the problem is still with the > | Vim-R-plugin, thank you. > | > | -- > | M.f.G. > | Henri Losoi > | > | References > | [1] https://twitter.com/heoaLov/status/240054739402891264 > | [2] https://twitter.com/heoaLov/status/238923344550981633 > | [3] http://koti.kapsi.fi/~he/SO/err_vimcom > | [4] http://www.vim.org/scripts/script.php?script_id=2628 > | [5] http://www.vim.org/scripts/script.php?script_id=2628 > | > | On Mon, Aug 27, 2012 at 11:00:33AM +0200, Johannes Ranke wrote: > | > Henry, > | > > | > On my end (Debian squeeze), vimcom installs fine (see below). > | > > | > However, if I remount my /home directory using the "noexec" option and > set the > | > lib argument in install.packages to a place on /home, I get a similar > error > | > message (in German...), about R not being able to load the shared object. > | > > | > So my question would be, did you mount your /home drive using the noexec > | > option? > | > > | > Kind regards, > | > > | > Johannes > | > > | > > | > ranke@time:~$ R > | > > | > R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > | > Copyright (C) 2012 The R Foundation for Statistical Computing > | > ISBN 3-900051-07-0 > | > Platform: x86_64-pc-linux-gnu (64-bit) > | > > | > R ist freie Software und kommt OHNE JEGLICHE GARANTIE. > | > Sie sind eingeladen, es unter bestimmten Bedingungen weiter zu verbreiten. > | > Tippen Sie 'license()' or 'licence()' für Details dazu. > | > > | > R ist ein Gemeinschaftsprojekt mit vielen Beitragenden. > | > Tippen Sie 'contributors()' für mehr Information und 'citation()', > | > um zu erfahren, wie R oder R packages in Publikationen zitiert werden > können. > | > > | > Tippen Sie 'demo()' für einige Demos, 'help()' für on-line Hilfe, oder > | > 'help.start()' für eine HTML Browserschnittstelle zur Hilfe. > | > Tippen Sie 'q()', um R zu verlassen. > | > > | > > install.packages("vimcom") > | > Installiere Paket(e) nach ‘/usr/local/lib/R/site-library’ > | > (da ‘lib’ nicht spezifiziert) > | > versuche URL 'http://cran.r-project.org/src/contrib/vimcom_0.9-2.tar.gz' > | > Content type 'application/x-gzip' length 16039 bytes (15 Kb) > | > URL geöffnet > | > ================================================== > | > downloaded 15 Kb > | > > | > * installing *source* package ‘vimcom’ ... > | > ** Paket ‘vimcom’ erfolgreich entpackt und MD5 Summen überprüft > | > ** libs > | > gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g > -c > | > vimcom.c -o vimcom.o > | > gcc -std=gnu99 -shared -o vimcom.so vimcom.o -L/usr/lib64/R/lib -lR > | > installiert nach /usr/local/lib/R/site-library/vimcom/libs > | > ** R > | > ** preparing package for lazy loading > | > ** help > | > *** installing help indices > | > ** building package indices > | > ** testing if installed package can be loaded > | > > | > * DONE (vimcom) > | > > | > Die heruntergeladenen Quellpakete sind in > | > ‘/tmp/RtmpReyLfN/downloaded_packages’ > | > > | > > | > On Friday 24 August 2012 01:58:41 Henri Losoi wrote: > | > > Hello, > | > > err dump [1], perhaps related [2]. Also > | > > > | > > $ sudo chown -R xyz:staff ~/R > | > > # sudo su; su xyz; groups > | > > web-content staff > | > > > | > > Not just vim-R-plugin -problem anymore, more pkg -installation -prob, > | > > doubting perms/group -issue but fixed them in accordance by Dirk's > hints. > | > > > | > > What is the problem in installing packages? > | > | _______________________________________________ > | R-SIG-Debian mailing list > | [email protected] > | https://stat.ethz.ch/mailman/listinfo/r-sig-debian > > -- > Dirk Eddelbuettel | [email protected] | http://dirk.eddelbuettel.com _______________________________________________ R-SIG-Debian mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-debian
