On 19 September 2012 at 20:38, John C Nash wrote:
| I have been having trouble with rjags on Ubuntu 10.04
^^^^^^^^^^^^
You may be on your own here. I would suggest updating to something current,
and remaining current -- at least that works for me. On Ubuntu 12.04 it
just works:
R> library(rjags)
Loading required package: coda
Loading required package: lattice
linking to JAGS 3.2.0
module basemod loaded
module bugs loaded
R>
Using
edd@max:~$ COLUMNS=76 dpkg -l | grep jags
ii jags 3.2.0-1precise Just Another Gibbs Sampler for Bayesian MCMC
ii r-cran-rjags 3.3-1 R interface to the JAGS Bayesian statistics
edd@max:~$
| > library(rjags)
| Loading required package: coda
| Loading required package: lattice
| linking to JAGS 3.2.0
| module basemod loaded
| Error : .onLoad failed in loadNamespace() for 'rjags', details:
| call: dyn.load(file)
| error: unable to load shared object '/usr/lib/JAGS/modules-3/bugs.so':
| /usr/lib/JAGS/modules-3/bugs.so: undefined symbol: fprec
| Error: package/namespace load failed for ‘rjags’
|
|
| > sessionInfo()
| R version 2.15.1 (2012-06-22)
| Platform: x86_64-pc-linux-gnu (64-bit)
|
| locale:
| [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
| [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
| [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
| [7] LC_PAPER=C LC_NAME=C
| [9] LC_ADDRESS=C LC_TELEPHONE=C
| [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
|
| attached base packages:
| [1] stats graphics grDevices utils datasets methods base
| >
|
| Also I have tried
|
| > dyn.load("/usr/lib/JAGS/modules-3/bugs.so")
| Error in dyn.load("/usr/lib/JAGS/modules-3/bugs.so") :
| unable to load shared object '/usr/lib/JAGS/modules-3/bugs.so':
| /usr/lib/JAGS/modules-3/bugs.so: undefined symbol: fprec
|
| After several uninstalls and reinstalls of jags and rjags, I did (as
superuser)
|
| apt-get remove --purge r-base-core
Please. R has not bearing here.
You have a package out of sorts. Worst, remove the package (here: jags, as
'dpkg -S /usr/lib/JAGS/modules-3/bugs.so' clearly tells you) and install
locally.
Dirk
| apt-get autoremove
|
| then reinstalled R, then rjags (the Michael Rutter PPA is in my sources
list), i.e.,
|
| apt-get install r-base-dev
| apt-get install rjags
|
| (I used the dev to make sure I got some of the tools etc.)
|
| No joy.
|
| On crunchbang stattler linux (under VirtualBox), things loaded fine. I
haven't tried
| actual computations though. (This is a debian squeeze variant.)
|
| Suggestions welcome, especially about the fprec symbol above. I am planning
to upgrade the
| 10.04 to something else soon, probably Mint Mate, but wanted to wait a few
more weeks to
| avoid doing this when having to travel.
|
| Cheers, JN
|
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--
Dirk Eddelbuettel | [email protected] | http://dirk.eddelbuettel.com
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