At 16:34 24/02/2014, you wrote:
Dear Elodie
Please do not reply to me personally but to the whole list
You now give us a different error message. Is
there any reason why you decided not to do this the first time?
I do not think there is much we can do to help
you until we are sure that you are telling us the
whole story. Please give us a minimal
reproducible example. I suspect your problem has
nothing to do with Debian and might be more suitable for R-help.
These warnings stop the script execution in
Shiny application (Rstudio shiny server
packages) where gdata and gplots are loaded :
An error has occurred
The application failed to start.
The application exited during initialization.
gdata: read.xls support for 'XLS' (Excel
97-2004) files ENABLED. gdata: read.xls support
for 'XLSX' (Excel 2007+) files ENABLED.
Attaching package: gdata L'objet suivant est
masqué from package:stats: nobs L'objet
suivant est masqué from package:utils:
object.size Erreur dans
`[.data.frame`(cancerandtechno, , 1) : undefined
columns selected Calls: runApp ... eval -> eval
-> do.call -> strsplit -> [ -> [.data.frame Exécution arrêtée
Le 24/02/2014 17:33, Michael Dewey a écrit :
At 16:17 24/02/2014, Elodie Chapeaublanc wrote:
Hi, I just installed Ubuntu 12.04.4. I
installed R by following instructions from
CRAN after modification into my /etc/apt/sources.list file
sudo apt-get update
sudo apt-get install r-base
sudo apt-get install r-base-dev
When I try to load library(gdata) ou
library(gplots), I have error message :
Dear Elodie
I am not that expert either at R or French but
I do not see any error message there. See inline below
library(gdata)
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.
gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.
Attachement du package : 'gdata'
L'objet suivant est masqué from 'package:stats':
nobs
Is this what was concerning you?
L'objet suivant est masqué from 'package:utils':
object.size
library(gplots)
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Attachement du package : 'gplots'
L'objet suivant est masqué from 'package:stats':
lowess
At this point does running one of the examples from either package work?
sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] gplots_2.12.1 gdata_2.13.2
loaded via a namespace (and not attached):
[1] bitops_1.0-6 caTools_1.16 gtools_3.3.0 KernSmooth_2.23-10
Thanks,
Elodie
--
--
Elodie Chapeaublanc
IE Bioinformatique
Équipe Oncologie Moléculaire
Institut Curie - UMR 144 - CNRS
26 rue d'Ulm - 75248 Paris Cedex 05
Tel: +33 1 56 24 63 57
Email: <mailto:[email protected]>[email protected]
_______________________________________________
R-SIG-Debian mailing list
<mailto:[email protected]>[email protected]
https://stat.ethz.ch/mailman/listinfo/r-sig-debian
Michael Dewey
<mailto:[email protected]>[email protected]
http://www.aghmed.fsnet.co.uk/home.html
--
--
Elodie Chapeaublanc
IE Bioinformatique
Équipe Oncologie Moléculaire
Institut Curie - UMR 144 - CNRS
26 rue d'Ulm - 75248 Paris Cedex 05
Tel: +33 1 56 24 63 57
Email: <mailto:[email protected]>[email protected]
Michael Dewey
[email protected]
http://www.aghmed.fsnet.co.uk/home.html
_______________________________________________
R-SIG-Debian mailing list
[email protected]
https://stat.ethz.ch/mailman/listinfo/r-sig-debian
