Luben,
Adding to what Tyler kindly said: On 23 July 2021 at 19:35, Tyler Smith wrote: | libcurl and libcurl4-openssl-dev are Debian packages, not R packages. You can install them from the command line (not R): | | sudo apt-get install libcurl4-openssl-dev | | Or use your package manager. Depending on exactly _which_ Debian (or Ubuntu) flavour you use you also can get *ALL* of the tidyverse *IN ONE SHOT* as binaries. I have several posts (and demos !!) on that below http://dirk.eddelbuettel.com/blog/code/r4/ so take a look and read up, and please come back here with questions. It is a difficult step to get all of tidyverse (or, say, rstan) but we *do* have in binaries. This is very much worth learning about methinks. Cheers, Dirk | Best, | | Tyler | | -- | plantarum.ca | | On Fri, Jul 23, 2021, at 7:31 PM, Luben Dimov wrote: | > Hello, | > | > I am able to install the tidyverse package on a computer with Windows | > OS, but not on Debian 10 stable. (I am new to R and RStudio and | > somewhat new to Debian.) | > | > I have the latest R and RStudio. While I easily install the packages | > for our workshop, the tidyverse is not getting installed. | > | > | > | > The more detailed output is at the very end of this message, but in | > short, the problem seems to start while installing the package curl, | > which is part of tidyverse: | > | > ---------------------- | > | > * installing *source* package ‘curl’ ... | > | > ** package ‘curl’ successfully unpacked and MD5 sums checked | > | > ** using staged installation | > | > Package libcurl was not found in the pkg-config search path. | > | > Perhaps you should add the directory containing `libcurl.pc' | > | > to the PKG_CONFIG_PATH environment variable | > | > No package 'libcurl' found | > | > Package libcurl was not found in the pkg-config search path. | > | > Perhaps you should add the directory containing `libcurl.pc' | > | > to the PKG_CONFIG_PATH environment variable | > | > No package 'libcurl' found | > | > Using PKG_CFLAGS= | > | > Using PKG_LIBS=-lcurl | > | > ---------------------- | > | > | > | > When I try to install libcurl, I get: | > | > ---------------------------- | > | > install.packages("libcurl") | > | > Installing package into ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1’ | > | > (as ‘lib’ is unspecified) | > | > Warning in install.packages : | > | > package ‘libcurl’ is not available for this version of R | > | > | > | > A version of this package for your version of R might be available | > elsewhere, | > | > see the ideas at | > | > https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages | > | > ------------------------------ | > | > | > | > Another suggestions is to install libcurl4-openssl-dev, but when I try | > to, I get: | > | > ----------------------------- | > | > > install.packages("libcurl4-openssl-dev") | > | > Installing package into ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1’ | > | > (as ‘lib’ is unspecified) | > | > Warning in install.packages : | > | > package ‘libcurl4-openssl-dev’ is not available for this version of R | > | > | > | > A version of this package for your version of R might be available | > elsewhere, | > | > see the ideas at | > | > https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages | > | > ------------------------------ | > | > | > | > Here is my session info: | > | > --------------------------------------- | > | > > sessionInfo() R version 4.1.0 (2021-05-18) Platform: x86_64-pc-linux- | > gnu (64-bit) Running under: Debian GNU/Linux 10 (buster) Matrix | > products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0 | > LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0 locale: [1] | > LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 | > LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 | > LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C | > LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached | > base packages: [1] stats graphics grDevices utils datasets methods base | > loaded via a namespace (and not attached): [1] compiler_4.1.0 | > tools_4.1.0 | > | > ------------------------------ | > | > | > | > And below is the full output with all the errors when trying to | > tidyverse. I tried installing it on Debian 11 Testing, but no luck | > there either, although the errors were different. | > Thank you in advance for your help. | > | > Luben | > | > -------------------------------------- | > | > > install.packages("tidyverse") | > | > Installing package into ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1’ | > | > (as ‘lib’ is unspecified) | > | > also installing the dependencies ‘gargle’, ‘curl’, ‘ids’, ‘openssl’, | > ‘googledrive’, ‘googlesheets4’, ‘httr’, ‘rvest’, ‘xml2’ | > | > | > | > trying URL ' | > https://cloud.r-project.org/src/contrib/gargle_1.2.0.tar.gz' | > | > Content type 'application/x-gzip' length 313418 bytes (306 KB) | > | > ================================================== | > | > downloaded 306 KB | > | > | > | > trying URL 'https://cloud.r-project.org/src/contrib/curl_4.3.2.tar.gz' | > | > Content type 'application/x-gzip' length 793345 bytes (774 KB) | > | > ================================================== | > | > downloaded 774 KB | > | > | > | > trying URL 'https://cloud.r-project.org/src/contrib/ids_1.0.1.tar.gz' | > | > Content type 'application/x-gzip' length 91213 bytes (89 KB) | > | > ================================================== | > | > downloaded 89 KB | > | > | > | > trying URL ' | > https://cloud.r-project.org/src/contrib/openssl_1.4.4.tar.gz' | > | > Content type 'application/x-gzip' length 1311285 bytes (1.3 MB) | > | > ================================================== | > | > downloaded 1.3 MB | > | > | > | > trying URL ' | > https://cloud.r-project.org/src/contrib/googledrive_2.0.0.tar.gz' | > | > Content type 'application/x-gzip' length 1593656 bytes (1.5 MB) | > | > ================================================== | > | > downloaded 1.5 MB | > | > | > | > trying URL ' | > https://cloud.r-project.org/src/contrib/googlesheets4_0.3.0.tar.gz' | > | > Content type 'application/x-gzip' length 435126 bytes (424 KB) | > | > ================================================== | > | > downloaded 424 KB | > | > | > | > trying URL 'https://cloud.r-project.org/src/contrib/httr_1.4.2.tar.gz' | > | > Content type 'application/x-gzip' length 159950 bytes (156 KB) | > | > ================================================== | > | > downloaded 156 KB | > | > | > | > trying URL 'https://cloud.r-project.org/src/contrib/rvest_1.0.0.tar.gz' | > | > Content type 'application/x-gzip' length 94134 bytes (91 KB) | > | > ================================================== | > | > downloaded 91 KB | > | > | > | > trying URL 'https://cloud.r-project.org/src/contrib/xml2_1.3.2.tar.gz' | > | > Content type 'application/x-gzip' length 271876 bytes (265 KB) | > | > ================================================== | > | > downloaded 265 KB | > | > | > | > trying URL ' | > https://cloud.r-project.org/src/contrib/tidyverse_1.3.1.tar.gz' | > | > Content type 'application/x-gzip' length 702779 bytes (686 KB) | > | > ================================================== | > | > downloaded 686 KB | > | > | > | > * installing *source* package ‘curl’ ... | > | > ** package ‘curl’ successfully unpacked and MD5 sums checked | > | > ** using staged installation | > | > Package libcurl was not found in the pkg-config search path. | > | > Perhaps you should add the directory containing `libcurl.pc' | > | > to the PKG_CONFIG_PATH environment variable | > | > No package 'libcurl' found | > | > Package libcurl was not found in the pkg-config search path. | > | > Perhaps you should add the directory containing `libcurl.pc' | > | > to the PKG_CONFIG_PATH environment variable | > | > No package 'libcurl' found | > | > Using PKG_CFLAGS= | > | > Using PKG_LIBS=-lcurl | > | > ------------------------- ANTICONF ERROR --------------------------- | > | > Configuration failed because libcurl was not found. Try installing: | > | > * deb: libcurl4-openssl-dev (Debian, Ubuntu, etc) | > | > * rpm: libcurl-devel (Fedora, CentOS, RHEL) | > | > * csw: libcurl_dev (Solaris) | > | > If libcurl is already installed, check that 'pkg-config' is in your | > | > PATH and PKG_CONFIG_PATH contains a libcurl.pc file. If pkg-config | > | > is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: | > | > R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' | > | > -------------------------------------------------------------------- | > | > ERROR: configuration failed for package ‘curl’ | > | > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/curl’ | > | > Warning in install.packages : | > | > installation of package ‘curl’ had non-zero exit status | > | > * installing *source* package ‘openssl’ ... | > | > ** package ‘openssl’ successfully unpacked and MD5 sums checked | > | > ** using staged installation | > | > Using PKG_CFLAGS= | > | > --------------------------- [ANTICONF] -------------------------------- | > | > Configuration failed because openssl was not found. Try installing: | > | > * deb: libssl-dev (Debian, Ubuntu, etc) | > | > * rpm: openssl-devel (Fedora, CentOS, RHEL) | > | > * csw: libssl_dev (Solaris) | > | > * brew: openssl@1.1 (Mac OSX) | > | > If openssl is already installed, check that 'pkg-config' is in your | > | > PATH and PKG_CONFIG_PATH contains a openssl.pc file. If pkg-config | > | > is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: | > | > R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' | > | > -------------------------- [ERROR MESSAGE] --------------------------- | > | > tools/version.c:1:10: fatal error: openssl/opensslv.h: No such file or | > directory | > | > #include <openssl/opensslv.h> | > | > ^~~~~~~~~~~~~~~~~~~~ | > | > compilation terminated. | > | > -------------------------------------------------------------------- | > | > ERROR: configuration failed for package ‘openssl’ | > | > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/openssl’ | > | > Warning in install.packages : | > | > installation of package ‘openssl’ had non-zero exit status | > | > * installing *source* package ‘xml2’ ... | > | > ** package ‘xml2’ successfully unpacked and MD5 sums checked | > | > ** using staged installation | > | > Package libxml-2.0 was not found in the pkg-config search path. | > | > Perhaps you should add the directory containing `libxml-2.0.pc' | > | > to the PKG_CONFIG_PATH environment variable | > | > No package 'libxml-2.0' found | > | > Package libxml-2.0 was not found in the pkg-config search path. | > | > Perhaps you should add the directory containing `libxml-2.0.pc' | > | > to the PKG_CONFIG_PATH environment variable | > | > No package 'libxml-2.0' found | > | > Using PKG_CFLAGS= | > | > Using PKG_LIBS=-lxml2 | > | > ------------------------- ANTICONF ERROR --------------------------- | > | > Configuration failed because libxml-2.0 was not found. Try installing: | > | > * deb: libxml2-dev (Debian, Ubuntu, etc) | > | > * rpm: libxml2-devel (Fedora, CentOS, RHEL) | > | > * csw: libxml2_dev (Solaris) | > | > If libxml-2.0 is already installed, check that 'pkg-config' is in your | > | > PATH and PKG_CONFIG_PATH contains a libxml-2.0.pc file. If pkg-config | > | > is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: | > | > R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...' | > | > -------------------------------------------------------------------- | > | > ERROR: configuration failed for package ‘xml2’ | > | > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/xml2’ | > | > Warning in install.packages : | > | > installation of package ‘xml2’ had non-zero exit status | > | > ERROR: dependency ‘openssl’ is not available for package ‘ids’ | > | > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/ids’ | > | > Warning in install.packages : | > | > installation of package ‘ids’ had non-zero exit status | > | > ERROR: dependencies ‘curl’, ‘openssl’ are not available for package | > ‘httr’ | > | > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/httr’ | > | > Warning in install.packages : | > | > installation of package ‘httr’ had non-zero exit status | > | > ERROR: dependency ‘httr’ is not available for package ‘gargle’ | > | > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/gargle’ | > | > Warning in install.packages : | > | > installation of package ‘gargle’ had non-zero exit status | > | > ERROR: dependencies ‘httr’, ‘xml2’ are not available for package | > ‘rvest’ | > | > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/rvest’ | > | > Warning in install.packages : | > | > installation of package ‘rvest’ had non-zero exit status | > | > ERROR: dependencies ‘gargle’, ‘httr’ are not available for package | > ‘googledrive’ | > | > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/googledrive’ | > | > Warning in install.packages : | > | > installation of package ‘googledrive’ had non-zero exit status | > | > ERROR: dependencies ‘curl’, ‘gargle’, ‘googledrive’, ‘httr’, ‘ids’ are | > not available for package ‘googlesheets4’ | > | > * removing ‘/home/luben/R/x86_64-pc-linux-gnu- | > library/4.1/googlesheets4’ | > | > Warning in install.packages : | > | > installation of package ‘googlesheets4’ had non-zero exit status | > | > ERROR: dependencies ‘googledrive’, ‘googlesheets4’, ‘httr’, ‘rvest’, | > ‘xml2’ are not available for package ‘tidyverse’ | > | > * removing ‘/home/luben/R/x86_64-pc-linux-gnu-library/4.1/tidyverse’ | > | > Warning in install.packages : | > | > installation of package ‘tidyverse’ had non-zero exit status | > | > | > | > The downloaded source packages are in | > | > ‘/tmp/RtmpF0FDpx/downloaded_packages’ | > | > > library(tidyverse) | > | > Error in library(tidyverse) : there is no package called ‘tidyverse’ | > | > _______________________________________________ | > R-SIG-Debian mailing list | > R-SIG-Debian@r-project.org | > https://stat.ethz.ch/mailman/listinfo/r-sig-debian | > | | _______________________________________________ | R-SIG-Debian mailing list | R-SIG-Debian@r-project.org | https://stat.ethz.ch/mailman/listinfo/r-sig-debian -- https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org _______________________________________________ R-SIG-Debian mailing list R-SIG-Debian@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-debian
