Hi,
I am running a simple NMDS as outlined by Jari Oksanen in vegantutor, e.g.
spp.dist<-vegdist(spp)spp.mds<-metaMDS(spp,trace=FALSE)spp.mds
I am able to plot the results (species nicely overlaying sites) using
plot(spp.mds,display="species",type="t",family="sans",font=2,xlim=c(-0.4,0.4),ylim=c(-0.4,0.4))#
and points(env.mds,display="sites")
However, try as I might, I am not able to make this figure look pretty enough
in R to satisfy journal editors/reviewers. I want to redraw the results in
Excel, but I don't know how to extract species and site coordinates from
spp.mds. I see that I can do this using isoMDS in MASS, but I'd prefer to use
vegan. Perhaps I'm missing something obvious, but I haven't been able to find
it anywhere so far. How does one go about extracting those coordinates?
Thanks in advance.
Lauren
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