Right, but mvabund fits quite different types of model to that fitted in a multivariate tree, which can be seen as an unsupervised constrained clustering of the multivariate species response matrix.
All the best Gavin On 24 June 2017 at 10:02, Torsten Hauffe <torsten.hau...@gmail.com> wrote: > As far as I remember, on Windows you will need to download and install the > Rtools first (https://cran.r-project.org/bin/windows/Rtools/) because some > parts of mvpart need to be compiled. > > You can analyse multiple species-environment relationships with the mvabund > package. This is not fancy machine-learning but solid likelihood statistic. > > HTH, > Torsten > > On 24 June 2017 at 11:57, Ralf Schäfer <sena...@ecotoxicology.de> wrote: > >> Manuel, >> >> I just checked, it is currently still compatible. So you can download from >> the archive and install from source - at least on Linux and OS X, nut sure >> about Windows. >> See Session information below: >> >> > R version 3.4.0 (2017-04-21) >> > Platform: x86_64-apple-darwin15.6.0 (64-bit) >> > Running under: macOS Sierra 10.12.5 >> > >> > Matrix products: default >> > BLAS: /Library/Frameworks/R.framework/Versions/3.4/ >> Resources/lib/libRblas.0.dylib >> > LAPACK: /Library/Frameworks/R.framework/Versions/3.4/ >> Resources/lib/libRlapack.dylib >> > >> > locale: >> > [1] de_DE.UTF-8/de_DE.UTF-8/de_DE.UTF-8/C/de_DE.UTF-8/de_DE.UTF-8 >> > >> > attached base packages: >> > [1] stats graphics grDevices utils datasets methods base >> > >> > other attached packages: >> > [1] mvpart_1.6-2 >> > >> > loaded via a namespace (and not attached): >> > [1] compiler_3.4.0 >> >> >> However, there are certainly other packages that can partition >> multivariate ecological data, though I am not aware of other packages for >> use with multivariate regression trees. >> >> Regards >> Ralf >> >> >> >> > Am 24.06.2017 um 17:47 schrieb Manuel Spínola <mspinol...@gmail.com>: >> > >> > Thank you Ralf, >> > >> > But I guess is not going to be newer versions and could be incompatible >> with newer version of R, so at some moment there will be no accessibility >> to the package. >> > >> > Manuel >> > >> > 2017-06-24 5:25 GMT-06:00 Ralf Schäfer <sena...@ecotoxicology.de >> <mailto:sena...@ecotoxicology.de>>: >> > Dear Manuel >> > >> > despite it has been removed, it should still work. >> > At least I used it last year - just install the version from the archive >> manually: >> > https://cran.r-project.org/src/contrib/Archive/mvpart/ < >> https://cran.r-project.org/src/contrib/Archive/mvpart/> >> > >> > Best regards >> > Ralf >> > >> > >> >> Date: Fri, 23 Jun 2017 13:59:13 -0600 >> >> From: Manuel Sp?nola <mspinol...@gmail.com <mailto:mspinol...@gmail.com >> >> >> >> To: "r-sig-ecology@r-project.org <mailto:r-sig-ecology@r-project.org>" >> <r-sig-ecology@r-project.org <mailto:r-sig-ecology@r-project.org>> >> >> Subject: [R-sig-eco] mvpart alternatives and machine learning >> >> multivariate analysis >> >> Message-ID: >> >> <CABkCotRiCwJjsh=_hsONMsh+OE52rC7L6E3Q4ssOUM=6w3DXTw@ >> mail.gmail.com <mailto:CABkCotRiCwJjsh=_hsONMsh+OE52rC7L6E3Q4ssOUM=6w3 >> d...@mail.gmail.com>> >> >> Content-Type: text/plain; charset="UTF-8" >> >> >> >> Dear list members, >> >> >> >> As mvpart has been removed form the CRAN repository, Is there any r >> package >> >> that do similar analysis (multivariate partitioning)? >> >> >> >> Also, is there any other machine learning technique to do multivariate >> >> analysis as done in ecology to asses multiple species-environment >> >> relationships? >> >> >> >> Thank you very much in advance, >> >> >> >> Manuel >> >> >> >> -- >> >> *Manuel Sp?nola, Ph.D.* >> >> Instituto Internacional en Conservaci?n y Manejo de Vida Silvestre >> >> Universidad Nacional >> >> Apartado 1350-3000 >> >> Heredia >> >> COSTA RICA >> >> mspin...@una.cr <mailto:mspin...@una.cr> <mspin...@una.ac.cr <mailto: >> mspin...@una.ac.cr>> >> >> mspinol...@gmail.com <mailto:mspinol...@gmail.com> >> >> Tel?fono: (506) 8706 - 4662 >> >> Personal website: Lobito de r?o <https://sites.google.com/ >> site/lobitoderio/ <https://sites.google.com/site/lobitoderio/>> >> >> Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/ < >> http://www.icomvis.una.ac.cr/>> >> > >> > >> > >> > -- >> > Manuel Spínola, Ph.D. >> > Instituto Internacional en Conservación y Manejo de Vida Silvestre >> > Universidad Nacional >> > Apartado 1350-3000 >> > Heredia >> > COSTA RICA >> > mspin...@una.cr <mailto:mspin...@una.ac.cr> >> > mspinol...@gmail.com <mailto:mspinol...@gmail.com> >> > Teléfono: (506) 8706 - 4662 >> > Personal website: Lobito de río <https://sites.google.com/ >> site/lobitoderio/> >> > Institutional website: ICOMVIS <http://www.icomvis.una.ac.cr/> >> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> R-sig-ecology mailing list >> R-sig-ecology@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-ecology >> > > [[alternative HTML version deleted]] > > _______________________________________________ > R-sig-ecology mailing list > R-sig-ecology@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-ecology -- Gavin Simpson, PhD _______________________________________________ R-sig-ecology mailing list R-sig-ecology@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-ecology