Hello,
Could you please test the solution at
https://stackoverflow.com/questions/45318188/getting-error-in-function-igraph-write-graph-graphml-while-installing-igrap
Specifically -
install.packages("devtools")
library(devtools)
install_github("igraph/rigraph")
Please let us know if this works
Regards,
-- Saint Pai
On Tue, Oct 10, 2017 at 01:40:53AM +0100, Paul Smith wrote:
> On Mon, Oct 9, 2017 at 4:42 PM, Tom Callaway <tcall...@redhat.com> wrote:
> >
> > On 10/09/2017 11:16 AM, Paul Smith wrote:
> >>
> >> I am trying to install
> >>
> >> igraph package
> >>
> >> but getting the following error:
> >>
> >> ------------------
> >> make: *** [/usr/lib64/R/etc/Makeconf:159: foreign-graphml.o] Error 1
> >> ERROR: compilation failed for package ‘igraph’
> >> * removing ‘/usr/lib64/R/library/igraph’
> >> ------------------
> >>
> >> Any ideas?
> >
> > Need to see a lot more logs, specifically, the items before that Error
> > occurs.
>
> Thanks, Tom. Below, you can find more logs:
>
> ---------------------
> # define strdup igraph_i_strdup
>
> In file included from /usr/include/string.h:634:0,
> from src/foreign-gml-parser.y:54:
> /usr/include/bits/string2.h:208:0: note: this is the location of the
> previous definition
> # define strdup(s) __strdup (s)
>
> gcc -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -DUSING_R
> -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include
> -ICOLAMD/Include -ISuiteSparse_config -I/usr/local/include -O2 -g
> -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2
> -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4
> -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1
> -m64 -mtune=generic -DNDEBUG -DNPARTITION -DNTIMER -DNCAMD -DNPRINT
> -DPACKAGE_VERSION=\"1.1.1\" -DINTERNAL_ARPACK
> -DIGRAPH_THREAD_LOCAL=/**/ -fpic -O2 -g -pipe -Wall
> -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
> -fstack-protector-strong --param=ssp-buffer-size=4
> -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1
> -m64 -mtune=generic -c foreign-graphml.c -o foreign-graphml.o
> foreign-graphml.c: In function ‘igraph_write_graph_graphml’:
> foreign-graphml.c:1408:46: error: expected ‘)’ before ‘GRAPHML_NAMESPACE_URI’
> ret=fprintf(outstream, "<graphml xmlns=\"" GRAPHML_NAMESPACE_URI "\"\n");
> ^~~~~~~~~~~~~~~~~~~~~
> foreign-graphml.c:1412:59: error: expected ‘)’ before ‘GRAPHML_NAMESPACE_URI’
> ret=fprintf(outstream, " xsi:schemaLocation=\""
> GRAPHML_NAMESPACE_URI "\n");
>
> ^~~~~~~~~~~~~~~~~~~~~
> foreign-graphml.c:1414:38: error: expected ‘)’ before ‘GRAPHML_NAMESPACE_URI’
> ret=fprintf(outstream, " " GRAPHML_NAMESPACE_URI
> "/1.0/graphml.xsd\">\n");
> ^~~~~~~~~~~~~~~~~~~~~
> make: *** [/usr/lib64/R/etc/Makeconf:159: foreign-graphml.o] Error 1
> ERROR: compilation failed for package ‘igraph’
> * removing ‘/usr/lib64/R/library/igraph’
>
> The downloaded source packages are in
> ‘/tmp/Rtmpq4eKlz/downloaded_packages’
> Updating HTML index of packages in '.Library'
> Making 'packages.html' ... done
> Warning message:
> In install.packages("igraph") :
> installation of package ‘igraph’ had non-zero exit status
> ---------------------
>
> Are they enough logs?
>
> Paul
>
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--
Regards,
M K Pai
Data Scientist
Red Hat
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