When various applications are split into modules (RHEL/CentOS
environment-modules package), such that
module load R proj gdal
is needed to make those applications and their pkg-config files available, the R
install.packages(‘rgdal’)
fails because it assumes proj and gdal are in the same place, and omits the -L…
link option for proj’s library path.
An easy workaround until this is fixed is
export proj_lib_path=`pkg-config proj --libs | awk '{print $1}'`
before you start R, then “install.packages(‘rgdal’)” works as expected.
The author of the package is working on a real fix, so this workaround may not
be needed for long.
Cheers,
Ric
--
Ric Anderson| Systems Administrator [Description: Description: Description:
Description: Description: Description: Description:
http://redbar.web.arizona.edu/logos/images/thumb_pawprints.gif]
Research And Discovery Tech | HPC Large Systems Support
XSEDE Campus Champion
[email protected]<mailto:[email protected]> (V):
+1-520-626-1642
[cid:[email protected]]
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