On Fri, 10 Sep 2021, Edzer Pebesma wrote:

I would say this indicates a broken installation of PROJ on your system, or you have more than one instance (and different versions) of PROJ installed.

I agree. The PROJ version used to install rgdal is not the same as the version with which proj.db was shipped, leading to the SQL error. Refer to https://github.com/r-spatial/sf/#multiple-gdal-geos-andor-proj-versions-on-your-system for ideas on disambiguating.

Roger


On 10/09/2021 12:20, Anna Mujal Colilles wrote:
 Hi,

 I am a new R user trying to transform lat-lon data to utm. I've been doing
 so in two different ways and both give me the same error. My machine is a
 Linux Ubuntu 18.04 system.

 The first way I wanted to transform them was:
 sp <-
 SpatialPoints(df[,c("longitude","latitude")],proj4string=CRS("+init=epsg:4326
 +proj=longlat
 +ellps=WGS84 +datum=WGS84 +no_defs +towgs84=0,0,0 "))
 sp2<-spTransform(sp, CRS("+proj=utm +zone=33 +datum=WGS84 +units=m
 +no_defs
 +ellps=WGS84 +towgs84=0,0,0"))

 the second option was
 sf_sample <- sf::st_as_sf(coord_sample, coords = c("longitude",
 "latitude"), crs = 4326)

 However, I keep having the same problem over and over again related to the
 crs init 4326

 Warning message:
 In CPL_crs_from_input(x) :
    GDAL Error 1: PROJ: proj_create_from_database: cannot build geodeticCRS
 4326: SQLite error on SELECT name, ellipsoid_auth_name, ellipsoid_code,
 prime_meridian_auth_name, prime_meridian_code, area_of_use_auth_name,
 area_of_use_code, publication_date, deprecated FROM geodetic_datum WHERE
 auth_name = ? AND code = ?: no such column: publication_date

 can anyone help me please?

 Thank you,

 Anna

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--
Roger Bivand
Emeritus Professor
Department of Economics, Norwegian School of Economics,
Postboks 3490 Ytre Sandviken, 5045 Bergen, Norway.
e-mail: roger.biv...@nhh.no
https://orcid.org/0000-0003-2392-6140
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