Dear list,
I've just built my new version of R 2.9.0 and installed my packages.
> sessionInfo()
R version 2.9.0 Patched (2009-04-20 r48365)
i386-apple-darwin9.6.0
locale:
C
attached base packages:
[1] stats graphics grDevices datasets utils methods base
I use rgdal for reading and writing raster data but when I try to
install version 0.6-7 (I already have 0.6-5 installed) from source, I
get an error. I have installed all of the external dependencies
(GDAL, PROJ4, etc) and think I am specifying the installation command
correctly. I have rgdal_0.6-7.tar.gz in my home directory, here is my
command
R --arch=x86_64 CMD INSTALL rgdal_0.6-7.tar.gz --configure-args='--
with-gdal-config=/Library/Frameworks/GDAL.framework/Versions/1.6/
Programs/gdal-config --with-proj-lib=/Library/Frameworks/
PROJ.framework/Versions/4.6/unix/lib --with-proj-include=/Library/
Frameworks/PROJ.framework/Versions/4.6/Headers' rgdal_0.6-7.tar.gz
Here is what happens: Please forgive the voluminous output.
* Installing to library '/Library/Frameworks/R.framework/Resources/
library'
* Installing *source* package 'rgdal' ...
gdal-config: /Library/Frameworks/GDAL.framework/Versions/1.6/Programs/
gdal-config
checking for gcc... gcc -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc -arch x86_64 -std=gnu99 option to accept ANSI C...
none needed
checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
checking for egrep... grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking proj_api.h usability... yes
checking proj_api.h presence... yes
checking for proj_api.h... yes
checking for pj_init_plus in -lproj... yes
Package CPP flags: -I/Library/Frameworks/PROJ.framework/Versions/4.6/
Headers -I/Library/Frameworks/GDAL.framework/Versions/1.6/Headers
Package LIBS: -L/Library/Frameworks/PROJ.framework/Versions/4.6/unix/
lib -L/Library/Frameworks/GDAL.framework/Versions/1.6/unix/lib -lgdal
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -
I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/Library/
Frameworks/PROJ.framework/Versions/4.6/Headers -I/Library/Frameworks/
GDAL.framework/Versions/1.6/Headers -I/usr/local/include -fPIC -g -
O2 -c OGR_write.cpp -o OGR_write.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -
I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/Library/
Frameworks/PROJ.framework/Versions/4.6/Headers -I/Library/Frameworks/
GDAL.framework/Versions/1.6/Headers -I/usr/local/include -fPIC -g -
O2 -c gdal-bindings.cpp -o gdal-bindings.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -
I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/Library/
Frameworks/PROJ.framework/Versions/4.6/Headers -I/Library/Frameworks/
GDAL.framework/Versions/1.6/Headers -I/usr/local/include -fPIC -g -
O2 -c ogr_geom.cpp -o ogr_geom.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -
I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/Library/
Frameworks/PROJ.framework/Versions/4.6/Headers -I/Library/Frameworks/
GDAL.framework/Versions/1.6/Headers -I/usr/local/include -fPIC -g -
O2 -c ogr_proj.cpp -o ogr_proj.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -
I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/Library/
Frameworks/PROJ.framework/Versions/4.6/Headers -I/Library/Frameworks/
GDAL.framework/Versions/1.6/Headers -I/usr/local/include -fPIC -g -
O2 -c ogrdrivers.cpp -o ogrdrivers.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -
I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/Library/
Frameworks/PROJ.framework/Versions/4.6/Headers -I/Library/Frameworks/
GDAL.framework/Versions/1.6/Headers -I/usr/local/include -fPIC -g -
O2 -c ogrsource.cpp -o ogrsource.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -
I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/Library/
Frameworks/PROJ.framework/Versions/4.6/Headers -I/Library/Frameworks/
GDAL.framework/Versions/1.6/Headers -I/usr/local/include -fPIC -g -
O2 -c projectit.cpp -o projectit.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -
undefined dynamic_lookup -single_module -multiply_defined suppress -L/
usr/local/lib -o rgdal.so OGR_write.o gdal-bindings.o ogr_geom.o
ogr_proj.o ogrdrivers.o ogrsource.o projectit.o -L/Library/Frameworks/
PROJ.framework/Versions/4.6/unix/lib -L/Library/Frameworks/
GDAL.framework/Versions/1.6/unix/lib -lgdal -lproj -F/Library/
Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
>>> Building/Updating help pages for package 'rgdal'
Formats: text html latex example
CRS-class text html latex example
GDALDataset-class text html latex
GDALDriver-class text html latex example
GDALMajorObject-class text html latex example
GDALRasterBand-class text html latex example
GDALReadOnlyDataset-class text html latex example
GDALReadOnlyDataset-methods text html latex example
GDALTransientDataset-class text html latex example
RGB2PCT text html latex example
SGDF2PCT text html latex example
SpatialGDAL-class text html latex example
closeDataset-methods text html latex
displayDataset text html latex example
make_EPSG text html latex example
projInfo text html latex example
project text html latex example
readGDAL text html latex example
readOGR text html latex example
showWKT text html latex example
spTransform-methods text html latex example
writeOGR text html latex example
** building package indices ...
* DONE (rgdal)
* Installing *source* package 'rgdal' ...
mv: rename /Library/Frameworks/R.framework/Resources/library/rgdal to /
Library/Frameworks/R.framework/Resources/library/00LOCK/rgdal/rgdal:
Directory not empty
gdal-config: /Library/Frameworks/GDAL.framework/Versions/1.6/Programs/
gdal-config
checking for gcc... gcc -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc -arch x86_64 -std=gnu99 option to accept ANSI C...
none needed
checking how to run the C preprocessor... gcc -arch x86_64 -std=gnu99 -E
checking for egrep... grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking proj_api.h usability... yes
checking proj_api.h presence... yes
checking for proj_api.h... yes
checking for pj_init_plus in -lproj... yes
Package CPP flags: -I/Library/Frameworks/PROJ.framework/Versions/4.6/
Headers -I/Library/Frameworks/GDAL.framework/Versions/1.6/Headers
Package LIBS: -L/Library/Frameworks/PROJ.framework/Versions/4.6/unix/
lib -L/Library/Frameworks/GDAL.framework/Versions/1.6/unix/lib -lgdal
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - x86_64
make: Nothing to be done for `all'.
** R
** inst
** preparing package for lazy loading
Error in nchar(filename) : element 1 is empty;
the part of the args list of '.Internal' being evaluated was:
(x, type, allowNA)
Error : unable to load R code in package 'rgdal'
ERROR: lazy loading failed for package 'rgdal'
* Removing '/Library/Frameworks/R.framework/Resources/library/rgdal'
* Restoring previous '/Library/Frameworks/R.framework/Resources/
library/rgdal'
Any thoughts would be greatly appreciated. Thanks
Corey
Corey Sparks
Assistant Professor
Department of Demography and Organization Studies
University of Texas at San Antonio
One UTSA Circle
San Antonio, TX 78249
210 458 6858
corey.sparks 'at' utsa.edu
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