Re: [R-SIG-Mac] test failures

Duncan Murdoch Thu, 30 Jun 2011 18:59:41 -0700

On 11-06-30 9:48 PM, BABA Yoshihiko wrote:

Dear all,


I am a MacOSX/Fink (which is more or less like Debian's APT) maintainer and 
making R binary. One of the users tried test suite with make -k check and get 
the following results. Some differences are numerical, while others show sign 
differences in the result.

Could someone possible explain/fix them?

You need to examine the differences, and decide which ones are problems,and which ones are inconsequential. If you think something is aproblem, then tell us that.

Sometimes numerical differences (including signs) matter, and sometimesthey don't.


Duncan Murdoch


Thanks

--------

#!/bin/sh -ev
make -k check || exit 2
make[2]: warning: jobserver unavailable: using -j1.  Add `+' to parent make 
rule.
WARNING: ignoring environment value of R_HOME
Testing examples for package 'base'
Testing examples for package 'tools'
  comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK
Testing examples for package 'utils'
Testing examples for package 'grDevices'
  comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ...
1951c1951
<  [1,]  0.00000   0.000000  0.000000e+00
---

[1,]  0.00000  0.000000e+00  0.000000e+00

1952c1952
<  [2,] 53.48418 175.364685  3.780017e+01
---

[2,] 53.48418  1.753647e+02  3.780017e+01

1953c1953
<  [3,] 71.91841 -68.706608  8.786408e+01
---

[3,] 71.91841 -6.870661e+01  8.786408e+01

1954c1954
<  [4,] 32.24075  -9.660595 -1.301930e+02
---

[4,] 32.24075 -9.660595e+00 -1.301930e+02

1955c1955
<  [5,] 91.01106 -71.173035 -1.534147e+01
---

[5,] 91.01106 -7.117303e+01 -1.534147e+01

1956c1956
<  [6,] 60.50231  84.566776 -1.081465e+02
---

[6,] 60.50231  8.456678e+01 -1.081465e+02

1957c1957
<  [7,] 97.14950   7.898148  1.064410e+02
---

[7,] 97.14950  7.898148e+00  1.064410e+02

1958c1958
<  [8,] 76.97594   0.000000 -5.554930e-14
---

[8,] 76.97594 -2.777465e-14 -5.554930e-14

Testing examples for package 'graphics'
  comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK
Testing examples for package 'stats'
  comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ...
6355c6355
<  Grand Mean: 291.5937
---

Grand Mean: 291.5938

12721c12721
<  Murder   -0.536  0.418 -0.341 -0.649
---

Murder   -0.536  0.418 -0.341  0.649

12722c12722
<  Assault  -0.583  0.188 -0.268  0.743
---

Assault  -0.583  0.188 -0.268 -0.743

12723c12723
<  UrbanPop -0.278 -0.873 -0.378 -0.134
---

UrbanPop -0.278 -0.873 -0.378  0.134

14355c14355
<  Grand Mean: 291.5937
---

Grand Mean: 291.5938

15442c15442
<  Murder   -0.54   0.42  -0.34  -0.65
---

Murder   -0.54   0.42  -0.34   0.65

15443c15443
<  Assault  -0.58         -0.27   0.74
---

Assault  -0.58         -0.27  -0.74

Testing examples for package 'datasets'
  comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK
Testing examples for package 'methods'
  comparing 'methods-Ex.Rout' to 'methods-Ex.Rout.save' ... OK
Testing examples for package 'grid'
  comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK
Testing examples for package 'splines'
  comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK
Testing examples for package 'stats4'
  comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK
Testing examples for package 'tcltk'
Testing examples for package 'compiler'
make[2]: warning: jobserver unavailable: using -j1.  Add `+' to parent make 
rule.
running strict specific tests
running code in 'eval-etc.R' ... OK
  comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ...WARNING: ignoring 
environment value of R_HOME
1d0
<  WARNING: ignoring environment value of R_HOME
make[3]: *** [eval-etc.Rout] Error 1
running code in 'simple-true.R' ... OK
  comparing 'simple-true.Rout' to './simple-true.Rout.save' ...WARNING: 
ignoring environment value of R_HOME
1d0
<  WARNING: ignoring environment value of R_HOME
make[3]: *** [simple-true.Rout] Error 1
running code in 'arith-true.R' ... OK
  comparing 'arith-true.Rout' to './arith-true.Rout.save' ...WARNING: ignoring 
environment value of R_HOME
1d0
<  WARNING: ignoring environment value of R_HOME
make[3]: *** [arith-true.Rout] Error 1
running code in 'arith.R' ... OK
  comparing 'arith.Rout' to './arith.Rout.save' ...WARNING: ignoring 
environment value of R_HOME
1d0
<  WARNING: ignoring environment value of R_HOME
make[3]: *** [arith.Rout] Error 1
running code in 'lm-tests.R' ... OK
  comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ...WARNING: ignoring 
environment value of R_HOME
1d0
<  WARNING: ignoring environment value of R_HOME
make[3]: *** [lm-tests.Rout] Error 1
running code in 'ok-errors.R' ... OK
  comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ...WARNING: ignoring 
environment value of R_HOME
1d0
<  WARNING: ignoring environment value of R_HOME
make[3]: *** [ok-errors.Rout] Error 1
running code in 'method-dispatch.R' ... OK
  comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ...WARNING: 
ignoring environment value of R_HOME
1d0
<  WARNING: ignoring environment value of R_HOME
make[3]: *** [method-dispatch.Rout] Error 1
running code in 'array-subset.R' ... OK
  comparing 'array-subset.Rout' to './array-subset.Rout.save' ...WARNING: 
ignoring environment value of R_HOME
1d0
<  WARNING: ignoring environment value of R_HOME
make[3]: *** [array-subset.Rout] Error 1
running code in 'any-all.R' ... OK
  comparing 'any-all.Rout' to './any-all.Rout.save' ...WARNING: ignoring 
environment value of R_HOME
1d0
<  WARNING: ignoring environment value of R_HOME
make[3]: *** [any-all.Rout] Error 1
running code in 'd-p-q-r-tests.R' ... OK
  comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ...WARNING: 
ignoring environment value of R_HOME
1d0
<  WARNING: ignoring environment value of R_HOME
make[3]: *** [d-p-q-r-tests.Rout] Error 1
make[3]: Target `test-Specific-strict' not remade because of errors.
make[2]: *** [test-Specific] Error 2
make[1]: *** [test-all-basics] Error 1
make[1]: Target `check' not remade because of errors.
make: *** [check] Error 2





--
BABA Yoshihiko
Urban Design Laboratory, Tokyo University
TEL: +81 (0)90 1738 7439

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Re: [R-SIG-Mac] test failures

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