Simon, I have downloaded the R.app GUI (R-GUI-5944-2.14-leopard-Leopard64.dmg) from http://r.research.att.com/. Everything works fine, when launching the R.app and loading the "zoo" package. I have deleted the R64.app which was installed with the standard R 2.14.0 currently available at R project website. This R.app is launching the R 64 bit version it seems.
An additional question related to the http://r.research.att.com/ R developers page. I there a way to set-up some sort of updating mechanism - similar to Linux Ubuntu set-up sources.list - so that R automatically updates (after agreeing) to the most recent stable version? Report from R.app: [R.app GUI 1.43 (5944) x86_64-apple-darwin9.8.0] > sessionInfo() R version 2.14.0 (2011-10-31) Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) locale: [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base > install.packages("zoo") Installing package(s) into ‘/Users/janvb/Library/R/2.14/library’ (as ‘lib’ is unspecified) trying URL 'http://www.freestatistics.org/cran/bin/macosx/leopard/contrib/2.14/zoo_1.7-6.tgz' Content type 'application/x-gzip' length 1397206 bytes (1.3 Mb) opened URL ================================================== downloaded 1.3 Mb The downloaded packages are in /var/folders/zU/zUFo9cfDGwisjk7fyjDVtk+++TI/-Tmp-//RtmpCVNhCN/downloaded_packages > require(zoo) Loading required package: zoo Attaching package: ‘zoo’ The following object(s) are masked from ‘package:base’: as.Date, as.Date.numeric > library(zoo) > thanks heaps for fast reply and support, Jan On 10/11/2011, at 3:41 PM, Simon Urbanek wrote: > Jan, > > On Nov 10, 2011, at 6:02 AM, Verbesselt, Jan wrote: > >> Dear all, >> >> I have just upgraded from 2.13.2 to 2.14.0 on my mac book pro on 10.6.8 OsX. >> After installing the "zoo" package - I am unable to load the zoo package in >> R using R64.app. >> >> What is causing this problem? Everything used to work fine in 2.13.2. Is >> there anything I need to fix after updating? >> > > It is probably my fault (details below) - a quick fix is to update your R.app > GUI from http://r.research.att.com/ > > Technical details: > > Recent R binaries (but only after 2.14.0 release) use @rpath to allow > re-location of the R framework - it means that you can have the entire R in > just one icon that you can move around as you please - just like the R.app > GUI now except that the entire R is in there and no other dependencies are > needed (e.g. you can just put it on a CD or thumb drive). According to Apple > documentation the default fallback to @rpath includes /Library/Frameworks > which is the location of the R framework when installed, so everything that > worked before with absolute paths should be working with @rpath. However, it > seems that for some unknown reason the R.app binaries don't fall back to the > old @rpath and/or there are some issues combining absolute paths and @rpath. > The most recent build of R.app include the LC_RPATH load commands set > accordingly so they don't need the fallback. It is indeed startling, because > the behavior that you see in Terminal, RStudio etc. is how it is supposed to > behave according to Apple documentation. Before I figure out how to solve > this you can simply grab more recent R.app. > > Thanks, > Simon > > > >> Strangely, I noticed that when using Rstudio or R from Terminal -> and >> loading the zoo package no problem occurs. >> >> Thanks for your help, >> Jan >> >> >> sessionInfo() >> install.packages("zoo") >> require(zoo) >> library(zoo) >> >> >> .Rprofile: Setting Amsterdam repository >> [R.app GUI 1.42 (5933) x86_64-apple-darwin9.8.0] >> >>> sessionInfo() >> R version 2.14.0 (2011-10-31) >> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) >> >> locale: >> [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8 >> >> attached base packages: >> [1] stats graphics grDevices utils datasets methods base >>> install.packages("zoo") >> Installing package(s) into ‘/Users/janvb/Library/R/2.14/library’ >> (as ‘lib’ is unspecified) >> trying URL >> 'http://www.freestatistics.org/cran/bin/macosx/leopard/contrib/2.14/zoo_1.7-6.tgz' >> Content type 'application/x-gzip' length 1397025 bytes (1.3 Mb) >> opened URL >> ================================================== >> downloaded 1.3 Mb >> >> >> The downloaded packages are in >> >> /var/folders/zU/zUFo9cfDGwisjk7fyjDVtk+++TI/-Tmp-//RtmpHiqeQS/downloaded_packages >>> require(zoo) >> Loading required package: zoo >> Error in dyn.load(file, DLLpath = DLLpath, ...) : >> unable to load shared object >> '/Users/janvb/Library/R/2.14/library/zoo/libs/x86_64/zoo.so': >> dlopen(/Users/janvb/Library/R/2.14/library/zoo/libs/x86_64/zoo.so, 6): >> Library not loaded: @rpath/R.framework/Versions/2.14/Resources/lib/libR.dylib >> Referenced from: /Users/janvb/Library/R/2.14/library/zoo/libs/x86_64/zoo.so >> Reason: image not found >>> library(zoo) >> Error in dyn.load(file, DLLpath = DLLpath, ...) : >> unable to load shared object >> '/Users/janvb/Library/R/2.14/library/zoo/libs/x86_64/zoo.so': >> dlopen(/Users/janvb/Library/R/2.14/library/zoo/libs/x86_64/zoo.so, 6): >> Library not loaded: @rpath/R.framework/Versions/2.14/Resources/lib/libR.dylib >> Referenced from: /Users/janvb/Library/R/2.14/library/zoo/libs/x86_64/zoo.so >> Reason: image not found >> Error: package/namespace load failed for ‘zoo’ >>> ' >> >> _______________________________________________ >> R-SIG-Mac mailing list >> R-SIG-Mac@r-project.org >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> > > _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
