On 11-11-12 11:30 PM, Prof Brian Ripley wrote:
On Sun, 13 Nov 2011, Riccardo Romoli wrote:
Hi, I have already installed R 2.14.0 and I have some problem to load
several packages, in particular xcms package. I installed it directly
from the GUI and when I try to load it the R I have:
library(xcms)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so':
dlopen(/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so,
6): Library not loaded: /usr/local/lib/libnetcdf.7.dylib
Referenced from:
/Users/riccardoromoli/Library/R/2.14/library/xcms/libs/x86_64/xcms.so
Reason: image not found
Inoltre: Warning message:
In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc
= lib.loc) :
there is no package called ‘digest’
Errore: package/namespace load failed for ‘xcms’
I think the error is the absence of ibnetcdf.7.dylib. Do you have any
idea how can I correct this error??
1) Ask BioC to build the package correctly, or
2) Build from the sources yourself, preferably using a static netcdf
library.
People should not be distributing Mac binary packages with hardcoded
paths to dependencies not in the R framework: CRAN does not.
Not true. rggobi, Cairo and other Mac binaries on CRAN have
hardcoded paths to a bunch of stuff that is not in the R framework.
In
particular, /usr/local/lib need administrative privileges to populate.
Note that installing the external stuff needed by rggobi, Cairo etc
also requires administrative privileges.
Cheers,
H.
Best
Riccardo
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--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: [email protected]
Phone: (206) 667-5791
Fax: (206) 667-1319
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