Dear all,
I can't figure out how R.app is getting my environment variable $PATH. Launching R via a terminal perfectly get my $PATH variable : > Sys.getenv()[["PATH"]] [1] "/Users/meurice/Documents/Developement/eclipseWorkSpace/ibp/genomics/utils/bash/:.:/usr/texbin/:/usr/local/texlive/2011/bin/x86_64-darwin:/opt/local/bin:/opt/local/sbin:/Users/meurice/Documents/Application/BioinfoTools/bowtie2-2.0.0-beta3:/Users/meurice/Documents/Developement/eclipseWorkSpace/ibp/genomics/utils/bash/:.:/usr/texbin/:/usr/local/texlive/2011/bin/x86_64-darwin:/opt/local/bin:/opt/local/sbin:/Users/meurice/Documents/Applications/BioinfoTools/bowtie2-2.0.0-beta3:/Users/meurice/Documents/Developement/eclipseWorkSpace/ibp/genomics/utils/bash/:.:/usr/texbin/:/usr/local/texlive/2011/bin/x86_64-darwin:/opt/local/bin:/opt/local/sbin:/Users/meurice/Documents/Tools/bowtie2-2.0.0-beta3:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/texbin:/usr/X11/bin" But when I'm launching R with R.app (or R studio), the $PATH I get from Sys.getenv() has nothing to do with my current and real $PATH : > Sys.getenv()[["PATH"]] [1] "/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin" I've managed to set up the $PATH directory through the use of .Renviron, but I would really like R.app to read my $PATH from my .bash_profil, which is not the case. Thanks by advance for any help. -- GM > sessionInfo() R version 2.14.0 (2011-10-31) Platform: i386-apple-darwin9.8.0/i386 (32-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] snowfall_1.84 snow_0.3-8 loaded via a namespace (and not attached): [1] tools_2.14.0 _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
