On Mar 27, 2012, at 6:31 PM, Grimes Mark wrote:
Dear People
I can't figure out how to fix this problem: rgl won't run under R
2.14.2 (it was working for me before under 2.14.0). The error message
is:
I'm having basically the same problem (at least to the extent that the
error message on attempted loading is the same), but would add that
rgl _was_ working with R 2.14.2 until I updated to the current version
from rgl 0.87 in a failed effort at answering posting on
StackOverflow. (I have tried reverting to rgl 0.87 without success.) I
have had problems in th past related to difference in freetype and
libpng This is, however, probably a Mac specific issue and should get
posted to the Mac list rather than the general R help list. I am
alternate-posting (correct term doubtful) this and do not think it
appropriate to respond to further replies on R-help.
I generally run the Mac R GUI 64 bit and installed both from binary
and source (with Xcode installed) using the Package Installer, and get
the same error message at the point of loading. I get the following
warnings during installation from source using teh Mac GUI Package
Installer with a target of rgl 0.92.861 and with the version that was
current as a couple of days ago 0.92.858 :
-----
ld warning: in /opt/local/lib/libpng12.dylib, file is not of required
architecture
ld warning: in /opt/local/lib/libX11.dylib, file is not of required
architecture
ld warning: in /opt/local/lib/libfreetype.dylib, file is not of
required architecture
ld warning: in /opt/local/lib/libz.dylib, file is not of required
architecture
mkdir Temp
mv x11*.o Temp
mkdir -p AGL
mv AGL/* .
MAKINGAGL=TRUE /Library/Frameworks/R.framework/Resources/bin/R CMD
SHLIB -o aglrgl.so *.cpp *.c \
osx/*.mm osx/*.cpp
mv: rename AGL/* to ./*: No such file or directory
make: [aglrgl.so] Error 1 (ignored)
------
sessionInfo()
R version 2.14.2 (2012-02-29)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] splines stats grDevices utils datasets graphics
methods base
other attached packages:
[1] rms_3.4-0 Hmisc_3.9-2 survival_2.36-12
sos_1.3-1 brew_1.0-6 lattice_0.20-0
loaded via a namespace (and not attached):
[1] cluster_1.14.2 grid_2.14.2 tools_2.14.2
> require(rgl)
Loading required package: rgl
Error : .onLoad failed in loadNamespace() for 'rgl', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/
R.framework/Versions/2.14/Resources/library/rgl/libs/x86_64/aglrgl.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/
library/rgl/libs/x86_64/aglrgl.so, 6): Symbol not found:
__ZN3gui13OSXGUIFactory12hasEventLoopEv
Referenced from: /Library/Frameworks/R.framework/Versions/2.14/
Resources/library/rgl/libs/x86_64/aglrgl.so
Expected in: dynamic lookup
library(rgl)
Error : .onLoad failed in loadNamespace() for 'rgl', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object '/Library/Frameworks/
R.framework/Versions/2.14/Resources/library/rgl/libs/x86_64/
aglrgl.so':
dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/
library/rgl/libs/x86_64/aglrgl.so, 6): Symbol not found:
__ZN3gui13OSXGUIFactory12hasEventLoopEv
Referenced from: /Library/Frameworks/R.framework/Versions/2.14/
Resources/library/rgl/libs/x86_64/aglrgl.so
Expected in: dynamic lookup
Error: package/namespace load failed for rgl
I tried re-installing the package several ways, including from R, both
binary and type='source', and from Terminal using R CMD INSTALL
rgl_0.92.858.tar.
I found some threads with this error but no solutions that I could
understand. I am an R user, not a developer. Do you have any idea
how to fix this?
Thanks for your help,
Mark
sessionInfo()
R version 2.14.2 (2012-02-29)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] splines stats graphics grDevices utils datasets
methods base
other attached packages:
[1] bio3d_1.1-3 RCytoscape_1.4.4
XMLRPC_0.2-4 graph_1.32.0 org.Hs.eg.db_2.6.4
[6] RSQLite_0.11.1 DBI_0.2-5
AnnotationDbi_1.16.19 Biobase_2.14.0 adegenet_1.3-4
[11] ade4_1.4-17 MASS_7.3-17 cluster_1.14.2
Hmisc_3.9-2 survival_2.36-12
[16] plyr_1.7.1
loaded via a namespace (and not attached):
[1] grid_2.14.2 IRanges_1.12.6 lattice_0.20-6 RCurl_1.91-1
tools_2.14.2 XML_3.9-4
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