Dear all (simon...) I’ve installed what I think is the recommended gcc+fortran installer pkg for Lion:
http://r.research.att.com/tools/gcc-42-5666.3-darwin11.pkg but get no fortran in my /usr/local/bin and compiling an R package that needs it (http://openmx.psyc.virginia.edu) fails... no fortran. I _think_ i have followed the instructions on http://r.research.att.com/tools/#gcc42 (it’s confusing that up-to-date OS instructions are buried down in the (long) list of possible packages to install: I would be happy to help reorg this...) gcc is fine which gcc /usr/local/bin/gcc but gfortran -bash: gfortran: command not found config info follows... sorry for the hassle t *** Config info *** Xcode 4.4 with command line tools installed echo $PATH :/usr/local/bin:/usr/local/mysql/bin/:/Users/tim/bin:/Users/tim/Applications/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/local/bin:/usr/local/mysql/bin:/Users/tim/bin:/Users/tim/bin/plink FYI, here’s the make trail from attempting to make OpenMx spearman:Users tim$ cd ~/bin/OpenMx/; svn update; cd trunk/; make clean; make install; cd ..; svn status At revision 2028. rm -rf build/* rm -rf models/passing/temp-files/* rm -rf models/failing/temp-files/* rm -rf build/* rm -rf models/passing/temp-files/* rm -rf models/failing/temp-files/* cp DESCRIPTION DESCRIPTION.bak sed '/Version:/d' DESCRIPTION.bak > DESCRIPTION echo "Version: "999.0.0"-"2028 >> DESCRIPTION cd build; R CMD build .. * checking for file ‘../DESCRIPTION’ ... OK * preparing ‘OpenMx’: * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories Removed empty directory ‘OpenMx/docs/source/static/Rdoc’ Removed empty directory ‘OpenMx/docs/source/static/demo’ Removed empty directory ‘OpenMx/docs/source/static’ Removed empty directory ‘OpenMx/docs/source/templates’ Removed empty directory ‘OpenMx/inst/unit-tests’ Removed empty directory ‘OpenMx/models/failing/temp-files’ Removed empty directory ‘OpenMx/models/passing/temp-files’ Removed empty directory ‘OpenMx/testsuite’ * looking to see if a ‘data/datalist’ file should be added * re-saving tabular files * building ‘OpenMx_999.0.0-2028.tar.gz’ mv DESCRIPTION.bak DESCRIPTION cd build; R CMD INSTALL "--configure-args=--enable-openmp" OpenMx_999.0.0-2028.tar.gz * installing to library ‘/Users/tim/Library/R/2.15/library’ * installing *source* package ‘OpenMx’ ... checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gcc option to support OpenMP... -fopenmp checking whether gcc is installed... yes checking build system type... i386-apple-darwin12.0.0 checking host system type... i386-apple-darwin12.0.0 checking for inst/npsol/osx/libnpsol.a... yes configure: creating ./config.status config.status: creating src/Makevars config.status: executing src/omxSymbolTable.h commands config.status: executing src/omxSymbolTable.c commands ** libs *** arch - i386 gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -Wall -fopenmp -mmacosx-version-min=10.4 -fPIC -g -O2 -c merge.c -o merge.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -Wall -fopenmp -mmacosx-version-min=10.4 -fPIC -g -O2 -c npsolWrap.c -o npsolWrap.o npsolWrap.c: In function ‘constraintFunction_’: npsolWrap.c:798:19: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -Wall -fopenmp -mmacosx-version-min=10.4 -fPIC -g -O2 -c omxAlgebra.c -o omxAlgebra.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -Wall -fopenmp -mmacosx-version-min=10.4 -fPIC -g -O2 -c omxAlgebraFunctions.c -o omxAlgebraFunctions.o gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -Wall -fopenmp -mmacosx-version-min=10.4 -fPIC -g -O2 -c omxAlgebraObjective.c -o omxAlgebraObjective.o gfortran -arch i386 -fPIC -g -O2 -c omxBLAS.f -o omxBLAS.o make[1]: gfortran: No such file or directory make[1]: *** [omxBLAS.o] Error 1 ERROR: compilation failed for package ‘OpenMx’ * removing ‘/Users/tim/Library/R/2.15/library/OpenMx’ * restoring previous ‘/Users/tim/Library/R/2.15/library/OpenMx’ make: *** [install] Error 1 ? typescript ? .profile ? trunk/demo/UnivariateTwinAnalysis_MatrixRaw_plusCov.R ? trunk/build/OpenMx_999.0.0-2028.tar.gz ? branches/three-matrix/src/.BC.szkLWC ? branches/experimental/src/.BC.zDfeyx spearman:OpenMx tim$ _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
