Hii All, i am facing a problem while loading the R/Bioconductor library "clusterProfiler" on my MacOSX 10.6.8 macbookPro. The version of R used is the latest one - R version 2.15.1 (2012-06-22).
Just to make matters simple i found a post from the archives, which seems to be a similar problem as mine. Simon Urbanek had tried to deal with it, however there was no concrete solution available in that post. Here is the link for this post. http://www.mail-archive.com/[email protected]/msg04609.html The error message is pasted below. Please help me in this regard. Thanks gurudutta `````````````````````````````````````````````````````````````````` R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit) [R.app GUI 1.52 (6188) x86_64-apple-darwin9.8.0] > library(clusterProfiler) Loading required package: DBI Loading Tcl/Tk interface ... *** caught segfault *** address 0x11000080, cause 'memory not mapped' Traceback: 1: sys.parent() 2: sys.function(sys.parent()) 3: formals(sys.function(sys.parent())) 4: match.arg(encoding) 5: match(match.arg(encoding), c("", "bytes", "UTF-8")) 6: textConnection("rval", "w", local = TRUE) 7: capture.output(print(args(GFF2GeneTable))) 8: paste(capture.output(print(args(GFF2GeneTable))), collapse = "") 9: gsub("\\s+", " ", paste(capture.output(print(args(GFF2GeneTable))), collapse = "")) 10: doTryCatch(return(expr), name, parentenv, handler) 11: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 12: tryCatchList(expr, classes, parentenv, handlers) 13: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 14: try(gsub("\\s+", " ", paste(capture.output(print(args(GFF2GeneTable))), collapse = "")), silent = TRUE) Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace > GFF2GeneTable("") Selection: """"""""""""""""""""""""""""""" [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
