On Nov 19, 2012, at 11:53 AM, Silvia Solis wrote:

Hello Ray,

Thanks a lot! it work perfectly. In the R FAQ for Mac is not well explain, or couldn't understand. I also download the XQuarts 2.7.4 (xorg-server 1.13.0), I need it to use the quarts devices when plotting?

The quartz device (which is the default) should come as part of the Mac grDevices package and needs no extra effort at installation. XQuartz package is the support for the X11 output which is called as a device with x11().

--
David.



Thanks again,

Silvia


El 19/11/2012, a las 11:39, "Ray DiGiacomo, Jr." <[email protected] > escribió:

Hi Silvia,

You may need to install this app first:

http://socserv.mcmaster.ca/jfox/Courses/soc3h6/tcltk-8.5.5-x11.dmg

Best Regards,

Ray DiGiacomo, Jr.
Healthcare Predictive Analytics Specialist
Master R Trainer
President, Lion Data Systems LLC
President, The Orange County R User Group
Board Member, TDWI
[email protected]
(m) 408-425-7851
San Juan Capistrano, California USA
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Check out my one-on-one web-based R Training Courses at liondatasystems.com/courses







On Mon, Nov 19, 2012 at 9:19 AM, Silvia SM <[email protected]> wrote:
Hello,

Maybe someone can help me, I just switch to Mac (from PC) and now I'm trying to run all the packages that I used on my prior computer. I've been trying to load the tcl/tk interface to run tkplots but every time I try I get the message below, and instructions to close or abort R.

I'm sending also info might be useful about the session.

sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets
[6] methods   base

other attached packages:
[1] igraph_0.6-3

MacOS 10.8

And I couldn't find the gcc version.


library(tcltk)
Loading Tcl/Tk interface ...
*** caught segfault ***
address 0x20044, cause 'memory not mapped'

Traceback:
1: sys.nframe()
2: dynGet("__NameSpacesLoading__", NULL)
3: loadNamespace(package, c(which.lib.loc, lib.loc))
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in", dcall, ": ") LONG <- 75L msg <- conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && identical(getOption("show.error.messages"), TRUE)) { cat(msg, file = stderr()) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 8: try({ ns <- loadNamespace(package, c(which.lib.loc, lib.loc)) dataPath <- file.path(which.lib.loc, package, "data") env <- attachNamespace(ns, pos = pos, dataPath = dataPath, deps)})
9: library(igraph)

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace


Selection:


Best,

Silvia
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David Winsemius, MD
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