On Dec 28, 2012, at 3:05 PM, peter dalgaard <[email protected]> wrote:

> 
> On Dec 28, 2012, at 20:40 , Roy Mendelssohn - NOAA Federal wrote:
> 
>> Hi All:
>> 
>> I recently upgraded my computer to 10.8.2, and my Java is now java 1.7 from 
>> Oracle.  I am running R 2.15.2, and now rjava and JGR don't work because 
>> what appears to be a problem with ipot.  I tried reinstalling rjava and got 
>> the following:
> 
> I can't remember this kind of stuff form one occasion to the next either, but 
> wouldn't it be something with "sudo R CMD javareconf" ?



For Mountain Lion, it should be:

  sudo R CMD javareconf 
JAVA_CPPFLAGS=-I/System/Library/Frameworks/JavaVM.framework/Headers

Regards,

Marc Schwartz

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