Re: [R-SIG-Mac] R.app crashing

Ken Knoblauch Tue, 16 Apr 2013 02:49:40 -0700

Your suggestion of removing R.app and reinstalling 3.0.0 worked.
Thank you, very much.


I would have tried to install R.app directly from http://r.research.att.com
but the only versions listed are 2.15.x and 3.1.x.

best,

Ken


Quoting Prof Brian Ripley <[email protected]>:

That log says

  Library not loaded:
/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib

'3.1' means R-devel, not 3.0.0 and not R-patched.

I can confirm this from today's R-patched: it looks like the wrong
version of R.app got bundled:

tystie% otool -L /Applications/R.app/Contents/MacOS/R
/Applications/R.app/Contents/MacOS/R:
        /Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib
(compatibility version 3.1.0, current version 3.1.0)


However, reverting to 3.0.0 should work.  One issue (and did we not see
a report from you about it?) is that the installer does not necessarily
replace the copy of R.app in /Applications if it finds another one.
(That has happened to me when the one I last used was a personal
build.)  So I would remove all copies of R.app from your system and
re-install 3.0.0.



On 16/04/2013 09:28, Ken Knoblauch wrote:

Hi,

I went to upgrade a working R 3.0.0 to the patched version and I'm
finding that
I can't open it.  I went back and downloaded the unpatched version and
find the same problem.  I can open R in the terminal, so sounds like
a problem with R.app.

I'm on a Mac Air running OS 10.7.5.  From the terminal:

 sessionInfo()
R version 3.0.0 (2013-04-03)
Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:
[1] fr_FR.UTF-8/fr_FR.UTF-8/fr_FR.UTF-8/C/fr_FR.UTF-8/fr_FR.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

The crash log is the following:

Process:         R [3611]
Path:            /Applications/R.app/Contents/MacOS/R
Identifier:      org.R-project.R
Version:         R 3.0.0 GUI 1.60 Snow Leopard build (6480)
Code Type:       X86-64 (Native)
Parent Process:  launchd [109]

Date/Time:       2013-04-16 10:12:24.774 +0200
OS Version:      Mac OS X 10.7.5 (11G63b)
Report Version:  9

Interval Since Last Report:          554272 sec
Crashes Since Last Report:           31
Per-App Crashes Since Last Report:   5
Anonymous UUID:                      938B8307-E22B-4402-A8AA-4E9401361605

Crashed Thread:  0

Exception Type:  EXC_BREAKPOINT (SIGTRAP)
Exception Codes: 0x0000000000000002, 0x0000000000000000

Application Specific Information:
dyld: launch, loading dependent libraries

Dyld Error Message:
  Library not loaded:
/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libR.dylib
  Referenced from: /Applications/R.app/Contents/MacOS/R
  Reason: image not found

Binary Images:
       0x100000000 -        0x100098fef +org.R-project.R (R 3.0.0 GUI
1.60 Snow Leopard build - 6480) <CF67A542-FD9A-3A86-B869-FB06FE012513>
/Applications/R.app/Contents/MacOS/R
    0x7fff65061000 -     0x7fff65095baf  dyld (195.6 - ???)
<0CD1B35B-A28F-32DA-B72E-452EAD609613> /usr/lib/dyld

Model: MacBookAir4,1, BootROM MBA41.0077.B0F, 2 processors, Intel Core
i5, 1.6 GHz, 4 GB, SMC 1.74f4
Graphics: Intel HD Graphics 3000, Intel HD Graphics 3000, Built-In, 384 MB
Memory Module: BANK 0/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE,
0x4D34373142353737334448302D4348392020
Memory Module: BANK 1/DIMM0, 2 GB, DDR3, 1333 MHz, 0x80CE,
0x4D34373142353737334448302D4348392020
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0xE9),
Broadcom BCM43xx 1.0 (5.106.198.19.22)
Bluetooth: Version 4.0.8f17, 2 service, 11 devices, 1 incoming serial ports
Network Service: Ethernet, Ethernet, en0
Serial ATA Device: APPLE SSD TS128C, 121,33 GB
USB Device: FaceTime Camera (Built-in), apple_vendor_id, 0x850a,
0xfa200000 / 3
USB Device: hub_device, 0x0424  (SMSC), 0x2513, 0xfa100000 / 2
USB Device: Apple Internal Keyboard / Trackpad, apple_vendor_id, 0x024a,
0xfa120000 / 5
USB Device: BRCM20702 Hub, 0x0a5c  (Broadcom Corp.), 0x4500, 0xfa110000 / 4
USB Device: Bluetooth USB Host Controller, apple_vendor_id, 0x821f,
0xfa113000 / 7
USB Device: hub_device, 0x0424  (SMSC), 0x2513, 0xfd100000 / 2

Thanks.

Ken



--
Brian D. Ripley,                  [email protected]
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595




--
Kenneth Knoblauch
Inserm U846
Stem-cell and Brain Research Institute
Department of Integrative Neurosciences
18 avenue du Doyen Lépine
69500 Bron
France
tel: +33 (0)4 72 91 34 77
fax: +33 (0)4 72 91 34 61
portable: +33 (0)6 84 10 64 10
http://www.sbri.fr/members/kenneth-knoblauch.html

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