Rohmatul, Check by doing R CMD build pkgName R CMD check pkgName_X_Y_Z.tar.gz
The building step excludes many common files, and is recommended. Kasper On Tue, Aug 6, 2013 at 3:43 AM, Prof Brian Ripley <rip...@stats.ox.ac.uk>wrote: > On 06/08/2013 08:41, Rohmatul Fajriyah wrote: > >> Dear Prof. Ripley and Prof. Winsemius, >> >> I have deleted the .Rapp.history (hope, it was all of them), but still >> got the same message when run the R CMD check PkgName. >> I'll shutdown the laptop, start a fresh session and will rename the R >> functions for the package and the package itself differently. >> Then I will see what happened and report it here. >> > > You are supposed to check the tarball produced by R CMD build .... > >> >> Many thanks for the respond and thoughts. >> >> With kind regards, >> Ema >> >> >> ------------------------------**------------------------------** >> ------------ >> *From:* Prof Brian Ripley <rip...@stats.ox.ac.uk> >> *To:* David Winsemius <dwinsem...@comcast.net> >> *Cc:* Rohmatul Fajriyah <rfajri...@yahoo.com>; "r-sig-mac@r-project.org" >> <r-sig-mac@r-project.org> >> *Sent:* Tuesday, August 6, 2013 8:06 AM >> *Subject:* Re: [R-SIG-Mac] hidden files and directories >> >> >> On 06/08/2013 01:16, David Winsemius wrote: >> > >> > On Aug 5, 2013, at 5:00 PM, Rohmatul Fajriyah wrote: >> > >> >> Dear All, >> >> >> >> I tried to build an R package (from the terminal) and everything was >> ok until R CMD check PackageName and I got this message: >> >> ...... >> >> * checking for hidden files and directories ... NOTE >> >> Found the following hidden files and directories: >> >> .DS_Store >> >> man/.Rapp.history >> > >> > Those files would both be invisible when using the Finder.app unless >> you used ls in a terminal session, but I guess you figured that out >> >> invisible *by default*: it is a Finder setting. >> >> > >> >> These were most likely included in error. See section Package >> >> structure in the Writing R Extensions manual. >> >> ...... >> >> >> >> I, then: >> >> a. went through the archives of this mailing list (until January >> 2011) and I could not find a similar problem. >> >> (apologise, if I missed it) >> > >> > In 2008 it was reported in the NEWS for R 2.7.1 that: >> > >> > >> http://markmail.org/search/?q=**list%3Aorg.r-project.r-help+** >> DS_Store#query:list%3Aorg.r-**project.r-help%20DS_Store+** >> page:1+mid:cx3hryqssis2slx7+**state:results<http://markmail.org/search/?q=list%3Aorg.r-project.r-help+DS_Store#query:list%3Aorg.r-project.r-help%20DS_Store+page:1+mid:cx3hryqssis2slx7+state:results> >> > >> > o R CMD build tries harder to clean up the inst/doc directory from >> the remnants of earlier builds. >> > >> > It also removes any directories with extension .Rcheck, and files >> .DS_Store and ._* (created by tar on Mac OS X under some circumstances: >> it now sets environment variables to ask for such files not to be >> created by that tar.) >> > >> > So we need to ask if this was just a warning message. It appears that >> there are mechanisms in place to remove those files. >> > >> > (It's arguably an R-devel topic.) >> >> It seems the OP did not use R CMD build, rather R CMD check. >> >> But files like man/.Rapp.history will need to be removed manually. >> >> >> >> >> -- >> Brian D. Ripley, rip...@stats.ox.ac.uk <mailto:rip...@stats.ox.ac.uk> >> >> Professor of Applied Statistics, >> http://www.stats.ox.ac.uk/~**ripley/<http://www.stats.ox.ac.uk/~ripley/> >> University of Oxford, Tel: +44 1865 272861 (self) >> 1 South Parks Road, +44 1865 272866 (PA) >> Oxford OX1 3TG, UK Fax: +44 1865 272595 >> >> >> > > -- > Brian D. Ripley, rip...@stats.ox.ac.uk > Professor of Applied Statistics, > http://www.stats.ox.ac.uk/~**ripley/<http://www.stats.ox.ac.uk/~ripley/> > University of Oxford, Tel: +44 1865 272861 (self) > 1 South Parks Road, +44 1865 272866 (PA) > Oxford OX1 3TG, UK Fax: +44 1865 272595 > > ______________________________**_________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/**listinfo/r-sig-mac<https://stat.ethz.ch/mailman/listinfo/r-sig-mac> > [[alternative HTML version deleted]]
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