Dear Simon,
> Did you try "Repair Disk Permissions" in "Disk Utility"?
Not previously, but I just did and some things were repaired. Then I
installed Rcmdr again (but didn't reinstall R 3.0.1), but got the same
results.
Here is the output you asked for:
> system("ls -ld /usr/local /usr/local/lib /usr/local/lib/libtcl*")
ls: /usr/local/lib/libtcl*: Permission denied
drwxr-xr-x 7 root wheel 238 Aug 19 16:44 /usr/local
drwx------ 31 macports wheel 1054 Aug 21 16:08 /usr/local/lib
I also went back to the Disk Utility and selected "Verify Disk
Permissions". It said:
Permissions differ on "usr/sbin/pppd"; should be -r-xr-xr-x ; they are
-r-sr-xr-x .
Warning: SUID file "usr/sbin/pppd" has been modified and will not be
repaired.
This Mac is from our loaner pool and was used for one year by professor who
just retired. He did teach a technology education course so I'm not sure
what kind of things he might have played around with.
Thank you for your assistance,
Sarah
On Wed, Aug 21, 2013 at 8:28 PM, Simon Urbanek
<[email protected]>wrote:
> Sarah,
>
> errno=13 is "permission denied" so it seems like your system's access
> control is somewhat misconfigured. Did you try "Repair Disk Permissions" in
> "Disk Utility"?
>
> If that doesn't help please send us the output of the following R command:
>
> system("ls -ld /usr/local /usr/local/lib /usr/local/lib/libtcl*")
>
> Thanks,
> Simon
>
>
>
> On Aug 21, 2013, at 7:51 PM, Sarah Hardy wrote:
>
> > Using R 3.0.1 on a Mac OS X 10.8.3 I have been unable to load the package
> > Rcmdr.
> >
> > I am not a regular Mac user, but I need to be able to help my students
> who
> > have Macs install R and Rcmdr to use it in my Intro Stats class. To that
> > end, this week I have been working on a Mac from our loaner pool. I have
> > been able to successfully install Rcmdr on Macs of all OS X types with
> > previous versions of R, so this is a new problem for me.
> >
> > Note that before attempting to install or load Rcmdr I installed XQuartz
> > and I can plot to a graphics window without any problems so I assume it
> is
> > working properly.
> >
> > Following the directions on
> > http://socserv.mcmaster.ca/jfox/Misc/Rcmdr/installation-notes.html I
> have
> > been able to install the Rcmdr package without apparent problems. But
> when
> > I attempt to load the Rcmdr package, either with the Package Manager or
> by
> > typing
> >
> >> library(Rcmdr)
> >
> > I get the following error messages:
> >
> > Loading required package: car
> > Loading required package: MASS
> > Loading required package: nnet
> > Error : .onLoad failed in loadNamespace() for 'tcltk', details:
> > call: dyn.load(file, DLLpath = DLLpath, ...)
> > error: unable to load shared object
> >
> '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/tcltk/libs/tcltk.so':
> >
> >
> dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/tcltk/libs/tcltk.so,
> > 10): Library not loaded: /usr/local/lib/libtcl8.6.dylib
> > Referenced from:
> >
> /Library/Frameworks/R.framework/Versions/3.0/Resources/library/tcltk/libs/tcltk.so
> > Reason: no suitable image found. Did find:
> > /usr/local/lib/libtcl8.6.dylib: stat() failed with errno=13
> > /usr/local/lib/libtcl8.6.dylib: stat() failed with errno=13
> > Error: package or namespace load failed for Rcmdr
> >
> > It looks to me like Rcmdr is attempting to load a tcltk CRAN package
> > which no longer exists with R 3.0.1 (which is now bundled with Tck/Tk
> 8.6.0).
> > One of the many things I have tried is installing
> > tcltk-8.5.5-x11.pkg<
> http://cran.cnr.berkeley.edu/bin/macosx/tools/tcltk-8.5.5-x11.pkg>,
> > but, as warned, that did not work. I have contacted the Rcmdr package
> > author who suggested that I uninstall R (which was an adventure in and of
> > itself) and reinstall it, but I had the same exact problems. He also
> > suggested that I seek help on the R Mac OS X help list and so here I am.
> I
> > am hoping someone can point me toward a solution as the start of the
> > semester is nearly upon us.
> >
> > Thank you,
> > Sarah Hardy
> >
> > --
> >
> > Sarah Hardy, PhD
> > Associate Professor of Mathematics
> > University of Maine Farmington
> > 207-778-7124 Office: Brinkman 100
> >
> > [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > R-SIG-Mac mailing list
> > [email protected]
> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
>
--
Sarah Hardy, PhD
Associate Professor of Mathematics
University of Maine Farmington
207-778-7124 Office: Brinkman 100
Link to Schedule: http://faculty.umf.maine.edu/~hardys/SHardyCalendar.html
[email protected]
[[alternative HTML version deleted]]
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