On Sep 12, 2013, at 5:50 AM, Simon Zehnder wrote: > I compiled R and made a check-all without errors (only for the PDF manuals - > but this is ok). Then I used > > sudo make install > > to install it to the R.framework. Now, when I want to use R on the shell no > command can be found, as the installation has not installed the binaries in > /usr/bin. If I try to change my PATH variable and add > /Library/Frameworks/R.framework/Ressources/bin it does not change a thing, I > still get the error: -bash: R: command not found. The only thing to make it > work is to go into the folder > /Libraries/Frameworks/R.framework/Ressources/bin/ and start it via ./R. >
What the CRAN installer does is essentially sudo ln -s /Library/Frameworks/R.framework/Resources/bin/R /usr/bin/R Obviously, changing the PATH works as well - make sure you check the value of PATH in the session you're running (bash uses a cached lookup, but recent versions should have no trouble re-trying after PATH changes) -- assuming running /Libraries/Frameworks/R.framework/Ressources/bin/R works. If it doesn't then maybe check the version symlinks. Re you earlier post - FSF builds of gcc don't support ObjC with Apple runtime, so you have to use Apple's clang (as you did). In my tests few months ago gcc 4.7/4.8 was too unreliable - it was miscompiling R so things were breaking randomly at run-time. If your build seems reliable, please share with use the exact version and settings. Thanks, Simon > I remember no such behaviour for prior builds of R. It seems Mac has changed > something since my last compilation of R sources. > > Can anyone help? > > Best > > Simon > > On Sep 12, 2013, at 10:49 AM, Simon Zehnder <[email protected]> wrote: > >> I did some progress on my problem: >> >> Using LDFLAGS and CPPFLAGS on the shell instead of in the config.site file >> changes the directories and make can find all the libraries. >> >> The next thing that came up, was the Mac-specific Cocoa issue. When I >> compile R sources with OBJC="gcc -arch x86_64" I get the following outputs: >> >> config.log: https://gist.github.com/anonymous/6534550 >> >> make.log: https://gist.github.com/anonymous/6534560 >> >> with errors starting in line 883 of the make.log. So it seems the gcc cannot >> handle the .m files properly. >> >> Then I used OBJC="clang" and I get the following output: >> >> config.log: https://gist.github.com/anonymous/6534614 >> >> make.log: https://gist.github.com/anonymous/6534606 >> >> Here I get (see line 879 in the make.log) some weird warning. I know these >> are only warnings, they do not influence the way R works later on, but I am >> interested why gcc cannot handle the Cocoa files at all and clang has these >> warnings. >> >> >> Best >> >> Simon >> >> >> On Sep 11, 2013, at 11:08 PM, Simon Zehnder <[email protected]> wrote: >> >>> Dear R-Users and R-Devels, >>> >>> I made a brand new install of Mac OS X Mountain Lion 10.8.4 on a new hard >>> drive and want to build R from sources. As I use OpenMP 3.1 in my C++ >>> extensions I used MacPorts to get the gcc48 compiler collection. >>> Installation run without a hassle and I set the mp-gcc48 active. >>> >>> I downloaded the R-3.0.1 tar.gz and extracted it. Then I changed the >>> config.site to the following: >>> >>> https://gist.github.com/anonymous/6529767 >>> >>> Furthermore I had to change my PATH variable in the .profile as it included >>> /usr/local/bin:/usr/local/sbin and I have not such a folder in my /usr. >>> >>> Now when I run configure I get the following config.log >>> >>> https://gist.github.com/anonymous/6529743 >>> >>> with the warning: "ld: warning: directory not found for option >>> '-L/usr/local/lib' "on line 217. This warning becomes an error if running >>> the make command. I still see the C linker using -L/usr/local/lib which >>> does not exist. I changed the LDFLAGS in the config.site to >>> -L/opt/local/lib but Rs configure script seems to be very resistant to my >>> new proposal. >>> >>> I need some help. How should I proceed? Which FLAGS can change the >>> directory the make script searches for libraries? What configure options >>> should be used with R-3.0.1 on OS X 10.8.4 using gcc-4.8.1? >>> >>> >>> Best >>> >>> Simon >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> [email protected] >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> _______________________________________________ >> R-SIG-Mac mailing list >> [email protected] >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > _______________________________________________ > R-SIG-Mac mailing list > [email protected] > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > > _______________________________________________ R-SIG-Mac mailing list [email protected] https://stat.ethz.ch/mailman/listinfo/r-sig-mac
