On 22/10/2013 05:15, John Maindonald wrote:
In trying to install the randomForest package from source under r-devel
(2013-10-20 r64082)
You have your compilers set up incorrectly.
I get
<<<<
[R.app GUI 1.62 (6580) x86_64-apple-darwin10.8.0]
[Workspace restored from /Users/johnm1/r/.RData]
[History restored from /Users/johnm1/r/.Rhistory]
trying URL 'http://cran.r-project.org/src/contrib/randomForest_4.6-7.tar.gz'
Content type 'application/x-gzip' length 77163 bytes (75 Kb)
opened URL
==================================================
downloaded 75 Kb
* installing *source* package ‘randomForest’ ...
** package ‘randomForest’ successfully unpacked and MD5 sums checked
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classTree.c -o
classTree.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/usr/local/include -fPIC -mtune=core2 -g -O2 -c regTree.c -o regTree.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/usr/local/include -fPIC -mtune=core2 -g -O2 -c regrf.c -o regrf.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99
-I/Library/Frameworks/R.framework/Resources/include -DNDEBUG
-I/usr/local/include -fPIC -mtune=core2 -g -O2 -c rf.c -o rf.o
gfortran-4.2 -arch x86_64 -fPIC -g -O2 -c rfsub.f -o rfsub.o
i686-apple-darwin9-gfortran-4.2.1: error trying to exec 'f951': execvp: No such
file or directory
make: *** [rfsub.o] Error 1
ERROR: compilation failed for package ‘randomForest’
* removing
‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library/randomForest’
I have Xcode 5.0 and the CLI installed.
llvm-gcc-4.2 is not part of Xcode 5. Did you perchance update to Xcode
5: that removes some things?
Any advice on what do I need to do to make f951 available?
Install the supported gfortran (which is 4.2.3 not 4.2.1): see the
R-admin manual.
Also, installing r-devel has the result that after switching back to R-3.0.2
patched,
it crashes upon starting. The issue seems to be with the GUI, as there seems to
be no problem from the command line. I will forward details if that seems
useful.
The R.app front-end (which you most likely mean by 'it' but did not say)
is tied to a particular version of R, and this is documented in the
R-admin manual. You most likely need to re-install the earlier version.
John Maindonald email: [email protected]
phone : +61 2 (6125)3473 fax : +61 2(6125)5549
Centre for Mathematics & Its Applications, Room 1194,
John Dedman Mathematical Sciences Building (Building 27)
Australian National University, Canberra ACT 0200.
--
Brian D. Ripley, [email protected]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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