Hello- I am facing issues generating my package binary for MacOS.
The generated binary doesn't work on another Macs :( It is missing the libgfortran.3.dylib once it's the binary, I'd expect my user doesn't need to have fortran installed ! Could you please help me ? sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base ***************************************** installed but doesn't load: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Library/Frameworks/R.framework/Versions/3.0/Resources/library/ProbMetab/libs/ProbMetab.so': dlopen(/Library/Frameworks/R.framework/Versions/3.0/Resources/library/ProbMetab/libs/ProbMetab.so, 6): Library not loaded: /usr/local/lib/libgfortran.3.dylib Referenced from: /Library/Frameworks/R.framework/Versions/3.0/Resources/library/ProbMetab/libs/ProbMetab.so Reason: image not found In addition: Warning messages: 1: package ProbMetab was built under R version 3.0.2 2: package Rcpp was built under R version 3.0.2 3: In fun(libname, pkgname) : mzR has been built against a different Rcpp version than is installed on your system. This might lead to errors when loading mzR. If you encounter such issues, please send a report, including the output of sessionInfo() to the Bioc mailing list -- http://www.bioconductor.org/help/mailing-list. 4: package igraph was built under R version 3.0.2 On Tue, Nov 5, 2013 at 12:19 PM, Diego M Salvanha <[email protected]> wrote: OPSS the right command is: install.packages("ProbMetab_1.0.tgz", repos=NULL) without the type="source" Cheers., Diego M Salvanha Grad. Student Inter-institutional Grad Program on Bioinformatics - University of Sao Paulo Member of LabPIB - http://labpib.fmrp.usp.br | Dr. Ricardo Z. N. Vencio Visiting Grad Student | Dr. Nitin Baliga's Group Institute for Systems Biology +1 (206) 732-1415 | +1 (206) 407-8560 On Nov 5, 2013, at 12:16 PM, Diego M Salvanha <[email protected]> wrote: > <ProbMetab_1.0.tgz> > > > you can install with command: > > install.packages("ProbMetab_1.0.tgz", repos=NULL, type="source") > > it should be ok now. > > then, > > library(ProbMetab) and let me know it you get any error. > > sorry to bother but I don't have another mac to try :( > > > Cheers., > Diego M Salvanha > Grad. Student Inter-institutional Grad Program on Bioinformatics - University > of Sao Paulo > Member of LabPIB - http://labpib.fmrp.usp.br | Dr. Ricardo Z. N. Vencio > Visiting Grad Student | Dr. Nitin Baliga's Group > Institute for Systems Biology > +1 (206) 732-1415 | +1 (206) 407-8560 > > > > > Cheers., Diego M Salvanha Grad. Student Inter-institutional Grad Program on Bioinformatics - University of Sao Paulo Member of LabPIB - http://labpib.fmrp.usp.br | Dr. Ricardo Z. N. Vencio Visiting Grad Student | Dr. Nitin Baliga's Group Institute for Systems Biology +1 (206) 732-1415 | +1 (206) 407-8560 [[alternative HTML version deleted]]
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